Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq87 127 5e-24 seq47 118 3e-21 seq27 114 3e-20 seq44 111 4e-19 seq89 86.0 1e-11 >seq87 Length=1238431 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| ||| || || || || |||||| Sbjct 677931 TGTCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCG 677990 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||||||| ||||| || | || || || |||||||||| ||||| || Sbjct 677991 GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGA 678050 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| || || || || || || || | || || || Sbjct 678051 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCG 678110 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 678111 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | ||||| ||| || || || || || || ||| Sbjct 436256 TGACCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCG 436315 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||||||| ||||| || | || || || |||||||||| |||||||| ||| Sbjct 436316 GAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGG---TCT 436372 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || || || || || | || ||||| || || | || ||| Sbjct 436373 GGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGAC 436432 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| |||||||| |||||||| ||||||||||| || ||||| Sbjct 436433 TCGACCTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 436485 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||||||||| ||||| || | || || || ||||| Sbjct 678197 TTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 678256 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || || ||| || || || || |||||||| || || || || Sbjct 678257 GATCAATCGCTGCTGG---TCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 678313 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || || || ||||||||||||||||| |||||||| ||||| Sbjct 678314 ATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTT 678373 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 678374 GACGAAAATTTGCAT 678388 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||||||||| ||||| || | || || || ||||| Sbjct 678425 TTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 678484 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || || ||| || || || || |||||||| || || || || Sbjct 678485 GATCAATCGCTGCTGG---TCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 678541 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | || || || || ||||||||||||||||| || |||| |||||| Sbjct 678542 GTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTT 678601 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 678602 GACGAAAATTTGCAT 678616 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||||||||| ||||| || || || || || || ||| Sbjct 436523 TCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAG 436582 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| |||||| || || || || || || || || | || ||| Sbjct 436583 ATGAGACGCTGTTG---GTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACG 436639 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || ||||||||||||||||| || || || |||||| Sbjct 436640 TTGTCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTG 436699 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 436700 ACAAAGATTTGCAT 436713 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | ||| || || ||||| || || || ||| Sbjct 436715 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 436774 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||||| ||||| || |||||| Sbjct 436775 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCTGGG 436831 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || || || || | || ||||| || || | || || || Sbjct 436832 GGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCG 436891 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || || || || || ||||| || ||||| Sbjct 436892 ACCTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 436941 >seq47 Length=302882 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| ||||| || || || | || || || || ||| Sbjct 149714 TCCTTTTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 149655 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| ||| ||||| || || ||||| || | || ||| Sbjct 149654 ATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACG 149598 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || ||||| ||||||||||| || || ||||||||| Sbjct 149597 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTG 149538 Query 288460 ACGAATATCTGC 288471 ||||| || ||| Sbjct 149537 ACGAAGATTTGC 149526 >seq27 Length=1194495 Score = 114 bits (126), Expect = 3e-20 Identities = 249/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || ||||||||||| || || || | ||||| | || | || Sbjct 53131 CCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCCGAGACGAC 53190 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || || ||||| |||||||| || || |||||||||| || |||||| || Sbjct 53191 GCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGGTTTCTGGATCGTCAA 53250 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||||| |||||||| | ||||| | ||||||| || | ||||| ||| ||| Sbjct 53251 GAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAACCAC--GAG 53308 Query 72596 TCCCAAC--AGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 72653 |||| | | || | ||||| || | || ||| || | ||||| | | | Sbjct 53309 TCCCCGCGTCGTGGTCGCACCTTCGTCACGAGGAAGATCTCGCGAGCTGTCGCCGAGA-T 53367 Query 72654 TTCAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 72711 || | | ||| | | | ||| | || ||||| || || || ||||| | ||||||| Sbjct 53368 CTCGCTCG-GTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGG 53426 Query 72712 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 72771 || | ||| || ||||| || | |||||| |||||||||| ||||| || || || | Sbjct 53427 GACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACCCCCGACG 53486 Query 72772 ACTATGT 72778 ||| ||| Sbjct 53487 ACTTTGT 53493 >seq44 Length=1311234 Score = 111 bits (122), Expect = 4e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | || || |||||||| || ||||| ||| Sbjct 308780 CCACCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCG 308721 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| ||||| || || ||| Sbjct 308720 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGG 308661 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || | || ||||| || || | ||| ||| || || Sbjct 308660 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 308601 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct 308600 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 308555 >seq89 Length=907297 Score = 86.0 bits (94), Expect = 1e-11 Identities = 213/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| || || | || |||||||| || || || || | |||||| | || | || Sbjct 275560 CCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACGAC 275501 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || || ||||| || ||||| || || ||||||||||| | |||||| || Sbjct 275500 CCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAA 275441 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||||| |||||||| ||||||| | |||||| ||| ||||| |||||| Sbjct 275440 GAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAACCACGAGTC 275381 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | | |||| ||||| || | || ||| || | ||||| | | ||| Sbjct 275380 CCCCCGCCGTGGCCGCACCTTCGTCACGAGAAAGATCTCGCGCGCCGTCGCCGAGA-TTT 275322 Query 72656 CAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 | | | ||| | | | ||| | || |||||||| | || ||||| | ||||||||| Sbjct 275321 CGCTCG-GTCAACAGGATTGCCTTTACCTCGGTAACTTGGAGGCCAAGCGTGATTGGGGA 275263 Query 72714 TATGCGAAGGATTACGTAGA 72733 | || |||||||| || Sbjct 275262 CACGCCCGCGATTACGTTGA 275243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652329337886