Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq27 114 3e-20 seq89 86.0 1e-11 >seq27 Length=1194495 Score = 114 bits (126), Expect = 3e-20 Identities = 249/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 |||||| || | || ||||||||||| || || || | ||||| | || | || Sbjct 53131 CCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCCGAGACGAC 53190 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || || || ||||| |||||||| || || |||||||||| || |||||| || Sbjct 53191 GCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGGTTTCTGGATCGTCAA 53250 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || ||||| |||||||| | ||||| | ||||||| || | ||||| ||| ||| Sbjct 53251 GAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAACCAC--GAG 53308 Query 68585 TCCCAAC--AGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642 |||| | | || | ||||| || | || ||| || | ||||| | | | Sbjct 53309 TCCCCGCGTCGTGGTCGCACCTTCGTCACGAGGAAGATCTCGCGAGCTGTCGCCGAGA-T 53367 Query 68643 TTCAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 68700 || | | ||| | | | ||| | || ||||| || || || ||||| | ||||||| Sbjct 53368 CTCGCTCG-GTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGG 53426 Query 68701 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 68760 || | ||| || ||||| || | |||||| |||||||||| ||||| || || || | Sbjct 53427 GACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACCCCCGACG 53486 Query 68761 ACTATGT 68767 ||| ||| Sbjct 53487 ACTTTGT 53493 >seq89 Length=907297 Score = 86.0 bits (94), Expect = 1e-11 Identities = 213/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || | || |||||||| || || || || | |||||| | || | || Sbjct 275560 CCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACGAC 275501 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || || || ||||| || ||||| || || ||||||||||| | |||||| || Sbjct 275500 CCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAA 275441 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || ||||| |||||||| ||||||| | |||||| ||| ||||| |||||| Sbjct 275440 GAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAACCACGAGTC 275381 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644 ||| | | |||| ||||| || | || ||| || | ||||| | | ||| Sbjct 275380 CCCCCGCCGTGGCCGCACCTTCGTCACGAGAAAGATCTCGCGCGCCGTCGCCGAGA-TTT 275322 Query 68645 CAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 68702 | | | ||| | | | ||| | || |||||||| | || ||||| | ||||||||| Sbjct 275321 CGCTCG-GTCAACAGGATTGCCTTTACCTCGGTAACTTGGAGGCCAAGCGTGATTGGGGA 275263 Query 68703 TATGCGAAGGATTACGTAGA 68722 | || |||||||| || Sbjct 275262 CACGCCCGCGATTACGTTGA 275243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878064100950