Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq27 114 3e-20
seq89 86.0 1e-11
>seq27
Length=1194495
Score = 114 bits (126), Expect = 3e-20
Identities = 249/367 (68%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464
|||||| || | || ||||||||||| || || || | ||||| | || | ||
Sbjct 53131 CCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCCGAGACGAC 53190
Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524
|| || || ||||| |||||||| || || |||||||||| || |||||| ||
Sbjct 53191 GCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGGTTTCTGGATCGTCAA 53250
Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584
|| ||||| |||||||| | ||||| | ||||||| || | ||||| ||| |||
Sbjct 53251 GAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAACCAC--GAG 53308
Query 68585 TCCCAAC--AGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642
|||| | | || | ||||| || | || ||| || | ||||| | | |
Sbjct 53309 TCCCCGCGTCGTGGTCGCACCTTCGTCACGAGGAAGATCTCGCGAGCTGTCGCCGAGA-T 53367
Query 68643 TTCAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 68700
|| | | ||| | | | ||| | || ||||| || || || ||||| | |||||||
Sbjct 53368 CTCGCTCG-GTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGG 53426
Query 68701 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 68760
|| | ||| || ||||| || | |||||| |||||||||| ||||| || || || |
Sbjct 53427 GACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACCCCCGACG 53486
Query 68761 ACTATGT 68767
||| |||
Sbjct 53487 ACTTTGT 53493
>seq89
Length=907297
Score = 86.0 bits (94), Expect = 1e-11
Identities = 213/320 (67%), Gaps = 4/320 (1%)
Strand=Plus/Minus
Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464
||| || || | || |||||||| || || || || | |||||| | || | ||
Sbjct 275560 CCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACGAC 275501
Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524
|| || || ||||| || ||||| || || ||||||||||| | |||||| ||
Sbjct 275500 CCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAA 275441
Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584
|| ||||| |||||||| ||||||| | |||||| ||| ||||| ||||||
Sbjct 275440 GAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAACCACGAGTC 275381
Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 68644
||| | | |||| ||||| || | || ||| || | ||||| | | |||
Sbjct 275380 CCCCCGCCGTGGCCGCACCTTCGTCACGAGAAAGATCTCGCGCGCCGTCGCCGAGA-TTT 275322
Query 68645 CAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 68702
| | | ||| | | | ||| | || |||||||| | || ||||| | |||||||||
Sbjct 275321 CGCTCG-GTCAACAGGATTGCCTTTACCTCGGTAACTTGGAGGCCAAGCGTGATTGGGGA 275263
Query 68703 TATGCGAAGGATTACGTAGA 68722
| || |||||||| ||
Sbjct 275262 CACGCCCGCGATTACGTTGA 275243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102878064100950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |