Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq87 158 1e-33 seq89 100 3e-16 >seq87 Length=1238431 Score = 158 bits (174), Expect = 1e-33 Identities = 176/234 (75%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | |||| |||||| || | ||| || || || ||||| ||||| Sbjct 677928 TACTG-TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTA 677986 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | ||||||| || || ||||| || |||||| |||||||||||||||| || Sbjct 677987 GTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTC 678046 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 |||||| ||||||||||||||| ||| || ||||| | |||| ||||| | Sbjct 678047 GGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGA 678106 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| || | ||| ||||||||||| || || || ||||| ||||| Sbjct 678107 CTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| || || || ||||| ||||| ||| | ||||||| || || Sbjct 678407 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678466 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||||||||||||||| ||||| || ||||||||||||||| Sbjct 678467 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678526 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| |||| |||| ||||||| |||||| |||| || | ||| | Sbjct 678527 GATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 678585 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| ||| || || ||||| ||||| Sbjct 678586 TGCCTGTCAAAGTCTTGACGAAAATTTGCAT 678616 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||||||| | ||| ||||| || ||||| ||||||||| Sbjct 436259 CCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAG 436318 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| ||||||||||||| || || || || Sbjct 436319 AGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGA 436378 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || || ||||| |||| |||| ||||| | |||||| Sbjct 436379 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGAC 436437 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || ||||| ||||| Sbjct 436438 CTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 436485 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| || || || ||||| ||||| ||| | ||||||| || || Sbjct 678179 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678238 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||||||||||||||| ||||| || ||||||||||||||| Sbjct 678239 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678298 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| ||||| | |||||| |||| || | ||| || Sbjct 678299 GATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTT 678358 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| || || || ||||| ||||| Sbjct 678359 GCCGGTCAGCGTCTTGACGAAAATTTGCAT 678388 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || |||||||| | Sbjct 436715 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 436774 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||||||||||||||| || || || Sbjct 436775 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 436834 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || || ||||| |||| |||| ||||| | |||||| Sbjct 436835 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGATGACTCGAC 436893 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| ||||| || || ||||| || || || ||||| Sbjct 436894 CTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 436941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || ||||| ||||| ||| | ||||||| || || Sbjct 436504 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 436563 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || || || |||| | ||||| || || || || |||||||||||||| Sbjct 436564 CAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 436623 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||||| |||| |||| ||||| | |||||| |||| || | ||| | Sbjct 436624 AATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTCT 436682 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || || ||||| || ||||| Sbjct 436683 TGCCAGTGAGCGTCTTGACAAAGATTTGCAT 436713 >seq89 Length=907297 Score = 100 bits (110), Expect = 3e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| |||||||||||||| || | || | || | | ||| ||| | | | Sbjct 77068 TACATCGAGTTTGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 77010 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | ||||||| || ||||| |||||||| | |||||||||||||||||||| |||||||| Sbjct 77009 CGCCGAGAACCCTTTCGACTTTATGAATATGATTTCGCTCGAGGGCAAGACAAACTTTTT 76950 Query 47558 CGAGAAGCGCGT 47569 |||||||| || Sbjct 76949 TGAGAAGCGTGT 76938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499985704880