Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq87 158 1e-33
seq89 100 3e-16
>seq87
Length=1238431
Score = 158 bits (174), Expect = 1e-33
Identities = 176/234 (75%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| ||| || || | |||| |||||| || | ||| || || || ||||| |||||
Sbjct 677928 TACTG-TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTA 677986
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
||| | ||||||| || || ||||| || |||||| |||||||||||||||| ||
Sbjct 677987 GTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTC 678046
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
|||||| ||||||||||||||| ||| || ||||| | |||| ||||| |
Sbjct 678047 GGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGA 678106
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| |||| || | ||| ||||||||||| || || || ||||| |||||
Sbjct 678107 CTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160
Score = 149 bits (164), Expect = 6e-31
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| || || || ||||| ||||| ||| | ||||||| || ||
Sbjct 678407 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678466
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| |||||||||||||||| ||||| || |||||||||||||||
Sbjct 678467 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678526
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
||| || ||||| |||| |||| ||||||| |||||| |||| || | ||| |
Sbjct 678527 GATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 678585
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| |||| ||| || || ||||| |||||
Sbjct 678586 TGCCTGTCAAAGTCTTGACGAAAATTTGCAT 678616
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||||||| | ||| ||||| || ||||| |||||||||
Sbjct 436259 CCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAG 436318
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| || || ||||| || |||||| ||||||||||||| || || || ||
Sbjct 436319 AGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGA 436378
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || || ||||| |||| |||| ||||| | ||||||
Sbjct 436379 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGAC 436437
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | ||| ||||||||||| || || || ||||| |||||
Sbjct 436438 CTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 436485
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| || || || ||||| ||||| ||| | ||||||| || ||
Sbjct 678179 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678238
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| |||||||||||||||| ||||| || |||||||||||||||
Sbjct 678239 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678298
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||||| | |||| ||||| | |||||| |||| || | ||| ||
Sbjct 678299 GATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTT 678358
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||||||| || || || ||||| |||||
Sbjct 678359 GCCGGTCAGCGTCTTGACGAAAATTTGCAT 678388
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | ||| ||||| || || || |||||||| |
Sbjct 436715 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 436774
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || |||||| |||||||||||||||| || || ||
Sbjct 436775 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 436834
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || || ||||| |||| |||| ||||| | ||||||
Sbjct 436835 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGATGACTCGAC 436893
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||| ||||| || || ||||| || || || |||||
Sbjct 436894 CTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 436941
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| ||||| || ||||| ||||| ||| | ||||||| || ||
Sbjct 436504 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 436563
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
| ||| || || || |||| | ||||| || || || || ||||||||||||||
Sbjct 436564 CAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 436623
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
|| || ||||| |||| |||| ||||| | |||||| |||| || | ||| |
Sbjct 436624 AATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTCT 436682
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || || || || ||||| || |||||
Sbjct 436683 TGCCAGTGAGCGTCTTGACAAAGATTTGCAT 436713
>seq89
Length=907297
Score = 100 bits (110), Expect = 3e-16
Identities = 103/132 (78%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497
|||||||| |||||||||||||| || | || | || | | ||| ||| | | |
Sbjct 77068 TACATCGAGTTTGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 77010
Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557
| ||||||| || ||||| |||||||| | |||||||||||||||||||| ||||||||
Sbjct 77009 CGCCGAGAACCCTTTCGACTTTATGAATATGATTTCGCTCGAGGGCAAGACAAACTTTTT 76950
Query 47558 CGAGAAGCGCGT 47569
|||||||| ||
Sbjct 76949 TGAGAAGCGTGT 76938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499985704880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |