Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq45 181 1e-40 seq27 152 6e-32 seq44 134 2e-26 seq89 98.7 1e-15 >seq45 Length=1063883 Score = 181 bits (200), Expect = 1e-40 Identities = 534/809 (66%), Gaps = 23/809 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| ||||| |||| ||||| || | || || || || Sbjct 39161 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGT 39220 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || |||| |||||| | || || |||| Sbjct 39221 CTTGCAGTCGTACAACTTCATGTCCGAGCGCTAC-TTCACCCACGCCTCGCCGACGCTCT 39279 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 39280 TCAACGCCGGAACGCCTCACCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACG 39339 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | ||||| |||| ||| |||| || || | ||||| ||| || | Sbjct 39340 ATTCGATTGAAGGCATCTACGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCG 39399 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 39400 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATCGCCGGCAC 39457 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||| | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 39458 GAATGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTA 39517 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 39518 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 39574 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | |||||||| || | || ||||| || | ||||| | || Sbjct 39575 GCACGCCGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCG 39634 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| |||||||||||||| |||||||||||| || | || ||| Sbjct 39635 CGCT--CGTGATCTCTTCTTTGCTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAG 39692 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| | ||| | ||||| || || | | | || ||||| ||| ||| | | Sbjct 39693 GCCGCCGGCGACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTAC 39752 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || || |||||| | | | | | || ||||| | || | || || | |||| Sbjct 39753 GGCGAAGAGTTTCGCGTCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACG 39812 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || |||||| | | || ||| || || | || Sbjct 39813 ATCCCCGC-GCAAAAGCTTTGGTATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCC 39871 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGA-GTAATCAAAAGAATTTGGGTGTGA 112377 | ||||| ||||| |||| ||| || ||||| | || |||||||| | || || Sbjct 39872 GTTCATGCTCTACAAGGACG-CTGCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGA 39930 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||| || ||||| || || |||||| Sbjct 39931 TCAAGTCGTCGAACCTTTGCACTGAAATC 39959 >seq27 Length=1194495 Score = 152 bits (168), Expect = 6e-32 Identities = 276/396 (70%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| ||| ||||| |||| | || ||| Sbjct 53122 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATC 53181 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 13710 |||| ||| ||||||||||| || ||| ||||||||| | ||| | | ||| | Sbjct 53182 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGG-TTTCT 53240 Query 13711 GGCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCA 13770 || |||| ||||| ||||||||||| |||| ||| |||||| ||| ||| | |||| Sbjct 53241 GGATCGTCAAGAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCA 53300 Query 13771 ACCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTAT 13828 |||| || || ||| | || ||| ||| ||| || || | |||||| | ||| | | | Sbjct 53301 ACCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGT 53358 Query 13829 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 13888 | | ||| | ||| || |||| | | | | | || ||||| | || || | Sbjct 53359 CGCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCG 53418 Query 13889 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 13948 |||||||| |||||| ||||| || || | |||||| | ||||| || ||||| Sbjct 53419 TGATTGGGGACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACAC 53478 Query 13949 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 ||||||| | ||| | || |||||||||||||| Sbjct 53479 CCCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 53514 >seq44 Length=1311234 Score = 134 bits (148), Expect = 2e-26 Identities = 251/360 (70%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 1114772 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1114831 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || ||| | |||||||| || |||||||||||| Sbjct 1114832 TTGCCGTAACGGAGCGAGTCGACGTCAGTGTAGACTTTACCCTGCTGCAGACCCAAGATC 1114891 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT-GAGCTGTG---TGACAGAGGCATCAC 176897 | ||||| ||| ||||| ||| || | ||| ||| | | || | | || |||| Sbjct 1114892 TGCTTGA--TCGCTTGAA-TCTCGGCAT--TGTCGAGGAGGGCCTTGCCCGCCGCTTCAC 1114946 Query 176898 GAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAG 176957 | || || |||| || || | ||||||||||| |||| || ||||| || |||| Sbjct 1114947 GCACGTTGAGCAACTTTCCTCGCAAGGGGAAGACACCATAGTTGTCTCGACCGACGACAG 1115006 Query 176958 AGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACT 177017 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||| Sbjct 1115007 CCAGACCCGACACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACT 1115066 Query 177018 TG--CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 177075 || || | | | |||||| || | ||||||||| || | ||| || ||| || || Sbjct 1115067 TGGACCCGTTCCT--CGTACCAGCGTGGTTCGCATCCTCGAGCTTGACAAGACCCGTGAT 1115124 >seq89 Length=907297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || ||||| ||| | || || Sbjct 275569 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 275510 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| |||||| |||||||||| | ||| | || || Sbjct 275509 CGAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 275450 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| || |||||||| Sbjct 275449 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAA 275390 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 275389 CCACGAGTCCCC 275378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741336978640