Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq45 250 5e-61 seq89 98.7 2e-15 seq42 93.3 8e-14 >seq45 Length=1063883 Score = 250 bits (276), Expect = 5e-61 Identities = 794/1217 (65%), Gaps = 43/1217 (4%) Strand=Plus/Minus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479 || ||||||||||||||||| |||||| ||||||||| |||| |||||||| ||| Sbjct 40276 GCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG---CTTGCGCGCCTCGGGTGAA 40220 Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||| ||||| ||| || |||| | ||||||| || || || |||||||| |||| Sbjct 40219 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGA 40162 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | |||||| ||| || ||||| || |||||||||| | Sbjct 40161 TGGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGGTAGTAGTTGACGTCAA 40102 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||| | ||| | || || ||| || || |||||| |||||||| ||| Sbjct 40101 TGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAGCTTCT------TGA 40048 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||||| || || | | || |||| ||| | || ||||| Sbjct 40047 AGTCGTACACGCCGT--TCTTGATGAAGCTCGGCAAA-GCGAT--------CGA-GGCCA 40000 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| || ||||| ||||||| | |||| ||||| || || || ||||| Sbjct 39999 AGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTCG 39940 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 ||||||| || || |||| || || || || || || |||||||||||||||| Sbjct 39939 ACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCAGCGTCCTTGTAGA 39880 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| || || ||| || || | ||| || | |||||| | ||| || | | | Sbjct 39879 GCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCATACCAAAGCTTTTGCG 39820 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC-- 221955 || | |||| ||||| | ||||| |||||| || | | || || | | Sbjct 39819 CGGGGATCGTCTTCTTGGCGCGGCCCTC---CTTTTCGTATT---TCTCGAACAAGACGC 39766 Query 221956 -AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 ||||| ||| ||||| | |||| ||||| || |||||| || | || || Sbjct 39765 GAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCC 39706 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 ||| | | | | ||| | || ||||||||| || || ||||| || || |||| Sbjct 39705 AGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAGCAAAGAAGA 39646 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 |||| | | || |||||| ||||| ||| || | || |||| ||||| || | Sbjct 39645 GATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGA 39586 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 ||| |||||||||||||| || |||| || | || ||||| |||||||||||||| | Sbjct 39585 CGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTT 39526 Query 222195 GATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 | || || | | | |||| ||| || || | || || | ||||| || Sbjct 39525 GGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGT 39466 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCG 222313 || || ||||| ||||| | ||| || | | ||| ||| | || ||| Sbjct 39465 AGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCG 39407 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 |||||||||||| || ||||| | ||||| ||||||| ||||| |||||| || Sbjct 39406 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAGATGCCTTCA 39347 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || || || ||||| | | | ||| ||||| ||||| | ||| | | | | | | Sbjct 39346 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTCCG 39287 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTC 222493 ||||| || ||||| || |||||| || ||||||| | ||||| | | ||||| | Sbjct 39286 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAGTTGTACGAC 39227 Query 222494 TCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTAC 222553 | | ||| | |||||| || ||||| || | |||| | |||| ||||| | Sbjct 39226 TGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGC 39167 Query 222554 TGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCT 222611 || || | || | |||| | | | || |||| ||| || || || |||| Sbjct 39166 TGCGGGCGTTCGGC--GACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTCT 39109 Query 222612 TGAACCCAAAGTAGTTG 222628 |||| |||||||||||| Sbjct 39108 TGAAGCCAAAGTAGTTG 39092 >seq89 Length=907297 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980 || |||||||| ||||||||||||||||| || || |||||||| || ||| Sbjct 77402 GGCTCGTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 77343 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||||||||||| | |||||||| ||||||| || ||||| ||||| | | | Sbjct 77342 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 77283 Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100 | |||| | | | |||| | || |||||| |||||||| ||||| Sbjct 77282 TC---CCACCTCGAGCGAAGACCTCACCCCGACACCGTCGCGCTCATCATCAAGGAGGCC 77226 Query 26101 GTGGAGATCGAGAAGGAGTT 26120 || |||||||||||||| || Sbjct 77225 GTCGAGATCGAGAAGGAATT 77206 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/199 (70%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACG-----CTCTAT 25567 ||||||||||||||||| || || ||||||||||| ||| |||| || ||| | Sbjct 78091 TGGACCGCCGAAGAGATGGACTTGTCCAAGGACATGCACGACTGGGACAACAAACTCAAG 78032 Query 25568 CCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627 || ||||||| | || || | |||| | || || || || || || || || | Sbjct 78031 CCC--GACGAGCGCTACTTCATCTCGCACGTCCTCGCCTTTTTCGCCGCGTCCGACGGCA 77974 Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGT 25687 | || || ||||| || |||| ||||| || | || || |||| || ||||| || Sbjct 77973 TCGTCAATGAGAACTTGGTCGAGCGATTCTCCGGTGAGGTCCAGTCCGCCGAGGCTCGGT 77914 Query 25688 GTTTCTACGGTTTCCAGAT 25706 | |||||||||||||| || Sbjct 77913 GCTTCTACGGTTTCCAAAT 77895 >seq42 Length=296686 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||| |||||||| | || ||| || ||| ||||||||||||| || || Sbjct 243553 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 243494 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| ||| | ||| |||| || |||| | ||| ||||| | | ||| || Sbjct 243493 GGCAACGACCTCCACGACTGGCACCACAAGCTCAA--CAACGACGAACGCTACTTTATCG 243436 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || || || || || || ||||| | ||||| ||||||||| ||||| Sbjct 243435 CCCACGTGCTCGCCTTTTTCGCCGCTTCGGATGGGGTTGTGAATGAGAATCTGGTCGAGA 243376 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | ||| | || || ||||||| || ||||| | ||| || || || || ||||| Sbjct 243375 GGTTCTCAAGCGAGGTGCAGTCCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 243321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843209353280