Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq45 241 2e-57 seq66 116 5e-20 seq87 105 8e-17 seq42 89.7 6e-12 >seq45 Length=1063883 Score = 241 bits (266), Expect = 2e-57 Identities = 338/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 39526 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 39467 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||| || ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 39466 TAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 39407 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| ||||| |||||||||||||| || Sbjct 39406 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAGATGCCTTCA 39347 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| ||| ||||||| || || || || |||||| |||||||| | ||| ||| Sbjct 39346 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTCCG 39287 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || |||||| | || |||||| || ||| | Sbjct 39286 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAGTTGTACGAC 39227 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 39226 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 39183 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 39182 ACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 39124 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | ||| ||| |||||||||| || | ||||||||||||| Sbjct 39123 AGCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 39073 Score = 138 bits (152), Expect = 1e-26 Identities = 297/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || ||| || ||||| ||||| | |||| | |||| || |||||| Sbjct 39976 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTC 39917 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | | ||| | |||||||||| ||||||| | || |||||| ||| Sbjct 39916 TTTTGGTTCGATTTTTTGTTTGCAGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCG 39857 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| || ||| || || |||| | || ||||||| | || | || ||||| Sbjct 39856 ACCTGGGCTTCGAGAATCGCATACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 39798 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 ||||| ||| | |||||||| ||||| || Sbjct 39797 GCCCTCCTTTTCGTATTTCTCGAACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAG 39738 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 |||||| || |||| || || ||||| | ||||||||| ||| | | | || ||| Sbjct 39737 GCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCAT 39678 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||||| || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 39677 GAAGAGATCGGGAATCCAGAGAGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 39618 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 ||||||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 39617 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT 39558 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 39557 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 39528 Score = 109 bits (120), Expect = 7e-18 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 |||||||||||| |||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 41134 CTGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCC 41075 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||| || || || ||| ||||| |||||||||||||| || | |||| Sbjct 41074 CGTCTTCAGTCCTCGCTTCCAACCGTAGAAGTGCATCGACGTGAGCTGCGCCATTGTCGG 41015 Query 1627101 G-TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 | ||| | ||| | ||||||||| || |||||| | ||| | || ||||| | Sbjct 41014 GCTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 40956 Query 1627160 CCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| || | | | | |||||| ||||||||| ||||||||||||| | Sbjct 40955 ACAGATCGATAATGGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 40896 Query 1627220 CG 1627221 || Sbjct 40895 CG 40894 >seq66 Length=2025303 Score = 116 bits (128), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421 ||||| || || | ||||||||||||||| || | | ||| ||||| |||| | Sbjct 1194452 GATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTGT---A 1194508 Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 || ||| || || ||||||||| ||||||| |||| ||||| ||||| |||||||| Sbjct 1194509 GTTCGCGAGCTTGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTT 1194568 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 | || | ||||| |||||| ||||| || |||||||| |||||||| | |||||| Sbjct 1194569 GAGGATCAGCATCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTT 1194628 Query 1254542 G 1254542 | Sbjct 1194629 G 1194629 Score = 116 bits (128), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421 ||||| || || | ||||||||||||||| || | | ||| ||||| |||| | Sbjct 1242456 GATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTGT---A 1242400 Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 || ||| || || ||||||||| ||||||| |||| ||||| ||||| |||||||| Sbjct 1242399 GTTCGCGAGCTTGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTT 1242340 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 | || | ||||| |||||| ||||| || |||||||| |||||||| | |||||| Sbjct 1242339 GAGGATCAGCATCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTT 1242280 Query 1254542 G 1254542 | Sbjct 1242279 G 1242279 Score = 109 bits (120), Expect = 7e-18 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGA 1254402 ||| ||| || || | | ||||| || || ||||||||||||||||| || | | Sbjct 1530454 TGGACAGCTCTCCAGGGAGGATCAATCGGACCGCGGTCTGGATCTCGCGCGACGAGATGG 1530513 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||| |||| ||| ||| || | ||||||||| ||||||| || | | Sbjct 1530514 TCGACTTGCGGTTGT---AGTTCGCGAGCTTGGACGCCTCGGTGACGATGCGTTCAAAGA 1530570 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGA-CATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||| ||||| |||||||| | || || ||||| |||||| ||||| ||| ||||||| Sbjct 1530571 TGTCATTGACGAACGAGTTGA-GAATGAGCATCGCCTTGTTCGAGATACCCGTGTCGGGG 1530629 Query 1254522 TGCACCTGCTTGAGCACCTTG 1254542 || || ||||| | ||| ||| Sbjct 1530630 TGGACTTGCTTCAACACTTTG 1530650 >seq87 Length=1238431 Score = 105 bits (116), Expect = 8e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 927765 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 927824 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 927825 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCGACCAAGGG 927883 Query 19172 ATTCGAGATTGG 19183 ||||||||||| Sbjct 927884 TTTCGAGATTGG 927895 >seq42 Length=296686 Score = 89.7 bits (98), Expect = 6e-12 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 869653 GATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTC-CTTCATGAACCGGC 869711 |||||| || || |||||| |||| |||| || || ||||| ||| | ||||| Sbjct 243320 GATCTGAAACCCATAAAAGCACCTCGCCTCGGCGGACTGCACCTCGCTTGA-GAACCTCT 243378 Query 869712 CGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGA 869771 || |||| ||||| ||| | || || ||||||||||| || || ||||| || Sbjct 243379 CGACCAGATTCTCATTCACAACCCCATCCGAAGCGGCGAAAAAGGCGAGCACGTGGGCGA 243438 Query 869772 TAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGCGCTGAGGT 869828 |||||| ||| ||||||| | ||||| ||||| | | |||| || ||||| Sbjct 243439 TAAAGTAGCGTTCGTCGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGT 243498 Query 869829 CCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 | | ||| ||||||| ||| | || || | ||| | ||||||||| |||| Sbjct 243499 CGATCTCTTCGGCGGACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCA 243550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127957138429