Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq45 205 1e-46 seq66 111 2e-18 seq87 89.7 7e-12 >seq45 Length=1063883 Score = 205 bits (226), Expect = 1e-46 Identities = 218/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | |||||| || |||| |||||||| || ||||| ||||| | Sbjct 39239 CATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGCCTCA 39298 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| ||||| || || ||| | ||||||| ||||||||| || |||||||| Sbjct 39299 CCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACGATTCGATTGAAGGCATCTA 39358 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| |||||| ||||||||||||||||||| | ||||| || |||||||| | Sbjct 39359 CGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCAT 39418 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | ||| ||||| | || ||||| || ||| | || |||||| | Sbjct 39419 CCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAATGGCTACTCGAACGGCAT 39478 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || |||||||| || || | ||| |||| ||||||||||||||||| Sbjct 39479 CGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCA 39526 Score = 109 bits (120), Expect = 8e-18 Identities = 298/457 (65%), Gaps = 10/457 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||||||| || Sbjct 39528 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTC 39587 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 39588 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 39641 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 39642 GATCTCTTCTTTGCTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 39701 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | ||||| ||||| |||| || |||||||| |||||| ||| |||| | Sbjct 39702 GACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAG 39761 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 ||| || | | | ||| | || | || | ||||| Sbjct 39762 TTTCGCGTCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 39820 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| ||| ||||| |||| ||||||| || | |||| | Sbjct 39821 GCAAAAGCTTTGGTATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 39880 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGC-AACCAGCAGAACCTGGGCACCACGACAGAGG 262205 |||||||||||| | ||| | | | | ||||| ||||||| ||||| | | | Sbjct 39881 CTACAAGGACGCTG-CAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGT 39939 Query 262206 CCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 | ||||| ||||| || ||| || ||| ||| |||| Sbjct 39940 CGAACCTTTGCACTGAAATCATCGAGTACTCGGCGCC 39976 Score = 98.7 bits (108), Expect = 1e-14 Identities = 175/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATT---G 263227 |||||||||||| ||| ||||||||| |||||| | | ||| | |||||| | Sbjct 40894 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAG----ACCATTATCG 40949 Query 263228 ATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCG 263287 || || | |||||||| | ||| | |||||| || ||||||||| | || | | Sbjct 40950 ATCTGTCCGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTT-G 41008 Query 263288 CCGA-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCT 263345 ||| |||||| | | ||| |||||||||||||| ||| | ||| || || || Sbjct 41009 TCGAGCCCGACAATGGCGCAGC-TCACGTCGATGCACTTCTACGGTTGGAAGCGAGGACT 41067 Query 263346 CAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGT 263405 ||||| ||||||||||| ||||||| || |||| | | || || | |||||||| Sbjct 41068 GAAGACGGGCATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTCACCGT 41127 Query 263406 CGATCAGG 263413 ||| |||| Sbjct 41128 CGACCAGG 41135 >seq66 Length=2025303 Score = 111 bits (122), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1194629 CAAGGTGTTGAAGCAGGTCCACCCCGATACCGGT-----ATC-TCGAACAAGGCGATGCT 1194576 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||| ||||| |||| ||||||| ||||||||| | || Sbjct 1194575 GATCCTCAACTCGTTCGTCAATGACATCTTCGAGCGCATCGCCACCGAGGCGTGCAAGCT 1194516 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGCG 725092 ||| || |||| ||||| ||| | | || ||||||||||||||| | || || Sbjct 1194515 CGCGAACTACAAC---CGCAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 1194459 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | || || || ||| |||||| |||| |||||||| Sbjct 1194458 ATTGATCCTCCCTGGAGAGCTATCCAAACACGCCATCTCGGAGGGCAC 1194411 Score = 111 bits (122), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1242279 CAAGGTGTTGAAGCAGGTCCACCCCGATACCGGT-----ATC-TCGAACAAGGCGATGCT 1242332 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||| ||||| |||| ||||||| ||||||||| | || Sbjct 1242333 GATCCTCAACTCGTTCGTCAATGACATCTTCGAGCGCATCGCCACCGAGGCGTGCAAGCT 1242392 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGCG 725092 ||| || |||| ||||| ||| | | || ||||||||||||||| | || || Sbjct 1242393 CGCGAACTACAAC---CGCAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 1242449 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | || || || ||| |||||| |||| |||||||| Sbjct 1242450 ATTGATCCTCCCTGGAGAGCTATCCAAACACGCCATCTCGGAGGGCAC 1242497 Score = 87.8 bits (96), Expect = 3e-11 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| || | |||||||| ||||| ||||| | || ||||||| Sbjct 1530614 CTCGAACAAGGCGATGCTCATTCTCAACTCGTTCGTCAATGACATCTTTGAACGCATCGT 1530555 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTC-CAACAAGCGCAACACGATCGGCACG---CGCG 725073 ||||||||| ||| | || ||| | |||| ||||| ||| | | || |||| Sbjct 1530554 CACCGAGGC--GTC--CAAGCTCGCGAACTACAACCGCAAGTCGACCATCTCGTCGCGCG 1530499 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 ||||||||||||| || || ||||| | | || || ||| ||| |||||| |||| | Sbjct 1530498 AGATCCAGACCGCGGTCCGATTGATCCTCCCTGGAGAGCTGTCCAAACACGCCATCTCGG 1530439 Query 725134 AGGGCAC 725140 | ||||| Sbjct 1530438 AAGGCAC 1530432 >seq87 Length=1238431 Score = 89.7 bits (98), Expect = 7e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 332854 GGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGAC 332913 ||| |||||||| | | | | || |||||| || || ||||| | | |||||||| Sbjct 843749 GGCATCAGTGAGCCTCGAGTACCTCAAGATGGCGCATCGACTCTGAATCGGCTCGATGAT 843808 Query 332914 CATTGACGACGTG-TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGG 332972 | ||| | || ||||| || | ||| || || || || |||| ||||||| | Sbjct 843809 C-TTGTTGCTCTGGTTGCACGCAAAGGCGAAGCGAGTGGTGTTGGAGAAGATTTCCATCG 843867 Query 332973 TCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGA 333032 || ||||| || |||||||| |||| || | ||||||| ||||||||||||| || Sbjct 843868 TCCTTCGGAGCGCTTGTTGGGCTCCCGGGGTCATCGAGTCGGCTTCGTCGAGGATGACGA 843927 Query 333033 TCTTGTGGCGCCC 333045 ||||||||| || Sbjct 843928 GCTTGTGGCGACC 843940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797986098194