Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq45 176 6e-39
seq27 152 6e-32
seq89 107 2e-18
>seq45
Length=1063883
Score = 176 bits (194), Expect = 6e-39
Identities = 560/859 (65%), Gaps = 17/859 (2%)
Strand=Plus/Minus
Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295
||||| || ||||| |||||||| || ||| ||| | | |||||| | |||||
Sbjct 40012 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 39953
Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCA 111354
|| || | ||| || ||| ||||| || | ||||||||||| || ||||| |||
Sbjct 39952 GTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCA 39893
Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414
|| ||||||||||||||| | || | || || || ||| | || |||||| || |
Sbjct 39892 -GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCATA 39834
Query 111415 CCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473
||||| | | || || || | | ||||| || |||||| ||||| || |
Sbjct 39833 CCAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGA 39775
Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533
| | | | |||||| || || | ||| ||| || || || | | | || ||||
Sbjct 39774 ACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGA 39715
Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593
| || | ||| | || | |||| || |||| |||||| || || |||||||| || |
Sbjct 39714 AGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAG 39655
Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653
| |||||||| | | || | || || | || ||||| || | || ||||
Sbjct 39654 CAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 39595
Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712
|||| | || || |||||||| ||||| || |||| |||| | ||| |||||
Sbjct 39594 ACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCT 39538
Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767
||| |||| | || |||||||| ||| ||| | || || ||||| || | |
Sbjct 39537 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGA 39478
Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825
| || | || | ||||| || || ||| || ||| | || | | | ||
Sbjct 39477 TGCCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAG--CCGGTCGCGCGGATGTTGTG 39420
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
|||| || || ||||| || || ||| ||||| |||| ||| | | || || |
Sbjct 39419 GATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTC 39360
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
||||| || | || || || ||||| | | || ||||| || || | ||||||
Sbjct 39359 GTAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGG 39300
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005
|| || || || |||||||| || || | ||||| |||| | | ||||||
Sbjct 39299 GTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACAT 39240
Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065
|| ||| | || |||||| || ||||| | ||||||||||||| ||||| ||
Sbjct 39239 GAAGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACG 39180
Query 112066 CATGAACATGTACTGTGGG 112084
||||| ||||| ||| |||
Sbjct 39179 CATGAGCATGTGCTGCGGG 39161
>seq27
Length=1194495
Score = 152 bits (168), Expect = 6e-32
Identities = 276/396 (70%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214
|||| |||| |||||||| |||| ||| ||| ||| ||||| |||| | || |||
Sbjct 53122 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATC 53181
Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 9273
|||| ||| ||||||||||| || ||| ||||||||| | ||| | | ||| |
Sbjct 53182 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGG-TTTCT 53240
Query 9274 GGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCA 9333
|| ||||||| || ||||||||||| |||| ||| || ||| ||| ||| | ||||
Sbjct 53241 GGATCGTCAAGAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCA 53300
Query 9334 ACCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTAT 9391
|||| || || ||| | || ||| ||| ||| || || | |||||| | ||| | | |
Sbjct 53301 ACCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGT 53358
Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451
| | ||| | ||| || |||| | | | | | || ||||| | || || |
Sbjct 53359 CGCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCG 53418
Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 9511
|||||||| |||||| ||||| || || | |||||| | ||||| || |||||
Sbjct 53419 TGATTGGGGACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACAC 53478
Query 9512 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547
||||||| | ||| | || ||||||||||||||
Sbjct 53479 CCCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 53514
>seq89
Length=907297
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214
|||| |||| || ||||| |||| ||| ||| || ||||| ||| | || ||
Sbjct 275569 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 275510
Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274
|||| ||| ||||||||||| |||||| |||||||||| | ||| | || ||
Sbjct 275509 CGAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 275450
Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334
| ||||||| || ||||||||||| |||| ||| |||||| ||| || ||||||||
Sbjct 275449 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAA 275390
Query 9335 CCATGAATCACC 9346
||| || || ||
Sbjct 275389 CCACGAGTCCCC 275378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628030924495200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |