Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq45 176 6e-39 seq27 152 6e-32 seq89 107 2e-18 >seq45 Length=1063883 Score = 176 bits (194), Expect = 6e-39 Identities = 560/859 (65%), Gaps = 17/859 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| |||||||| || ||| ||| | | |||||| | ||||| Sbjct 40012 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 39953 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCA 111354 || || | ||| || ||| ||||| || | ||||||||||| || ||||| ||| Sbjct 39952 GTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCA 39893 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 || ||||||||||||||| | || | || || || ||| | || |||||| || | Sbjct 39892 -GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCATA 39834 Query 111415 CCAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||||| | | || || || | | ||||| || |||||| ||||| || | Sbjct 39833 CCAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGA 39775 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | | | | |||||| || || | ||| ||| || || || | | | || |||| Sbjct 39774 ACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGA 39715 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 | || | ||| | || | |||| || |||| |||||| || || |||||||| || | Sbjct 39714 AGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAG 39655 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 | |||||||| | | || | || || | || ||||| || | || |||| Sbjct 39654 CAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 39595 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712 |||| | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 39594 ACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCT 39538 Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 ||| |||| | || |||||||| ||| ||| | || || ||||| || | | Sbjct 39537 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGA 39478 Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825 | || | || | ||||| || || ||| || ||| | || | | | || Sbjct 39477 TGCCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAG--CCGGTCGCGCGGATGTTGTG 39420 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| || || ||||| || || ||| ||||| |||| ||| | | || || | Sbjct 39419 GATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTC 39360 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||| || | || || || ||||| | | || ||||| || || | |||||| Sbjct 39359 GTAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGG 39300 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 || || || || |||||||| || || | ||||| |||| | | |||||| Sbjct 39299 GTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACAT 39240 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || ||| | || |||||| || ||||| | ||||||||||||| ||||| || Sbjct 39239 GAAGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACG 39180 Query 112066 CATGAACATGTACTGTGGG 112084 ||||| ||||| ||| ||| Sbjct 39179 CATGAGCATGTGCTGCGGG 39161 >seq27 Length=1194495 Score = 152 bits (168), Expect = 6e-32 Identities = 276/396 (70%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| |||| ||| ||| ||| ||||| |||| | || ||| Sbjct 53122 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATC 53181 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATT 9273 |||| ||| ||||||||||| || ||| ||||||||| | ||| | | ||| | Sbjct 53182 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGG-TTTCT 53240 Query 9274 GGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCA 9333 || ||||||| || ||||||||||| |||| ||| || ||| ||| ||| | |||| Sbjct 53241 GGATCGTCAAGAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCA 53300 Query 9334 ACCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTAT 9391 |||| || || ||| | || ||| ||| ||| || || | |||||| | ||| | | | Sbjct 53301 ACCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGT 53358 Query 9392 CAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAG 9451 | | ||| | ||| || |||| | | | | | || ||||| | || || | Sbjct 53359 CGCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCG 53418 Query 9452 AGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGA 9511 |||||||| |||||| ||||| || || | |||||| | ||||| || ||||| Sbjct 53419 TGATTGGGGACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACAC 53478 Query 9512 AGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 ||||||| | ||| | || |||||||||||||| Sbjct 53479 CCCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 53514 >seq89 Length=907297 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 275569 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 275510 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| |||||| |||||||||| | ||| | || || Sbjct 275509 CGAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 275450 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| || |||||||| Sbjct 275449 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAA 275390 Query 9335 CCATGAATCACC 9346 ||| || || || Sbjct 275389 CCACGAGTCCCC 275378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030924495200