Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq45 214 2e-50 seq44 136 5e-27 >seq45 Length=1063883 Score = 214 bits (236), Expect = 2e-50 Identities = 562/848 (66%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || || || | | ||| ||| | | |||||| || ||||| Sbjct 40012 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 39953 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||| | ||| || ||| || ||||| | ||||||||| || || ||| |||| Sbjct 39952 GTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCA 39893 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | || || || |||| | |||||| || | | Sbjct 39892 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCATAC 39833 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | | || || || | || ||||| || ||||| | ||||| || | | Sbjct 39832 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 39774 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 | | | ||||||||| || | | || ||| || || || | | |||||||| Sbjct 39773 CAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 39714 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || | |||| || |||| ||||||||| || || |||||||| || Sbjct 39713 GAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAGC 39654 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||||||||| ||| ||| |||| || | || || || || | |||| || Sbjct 39653 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 39594 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186 || | || || ||||||||||| || ||||| | ||||| | || ||| Sbjct 39593 CTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 39534 Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 ||| | |||| || || | ||| ||| ||| | ||||| ||||| || | ||| || Sbjct 39533 GCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCC 39474 Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | |||||| || || ||| || ||| | | || | || | ||||||| Sbjct 39473 GTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCCGG--TCGCGCGGATGTTGTGGATG 39416 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 || ||| ||||| || || ||| ||||| |||||||| | |||| || ||||| Sbjct 39415 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAG 39356 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || || ||||| || |||| | | || ||||| ||| ||| | || || Sbjct 39355 ATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGA 39296 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483 || || || ||||||||||| || || | |||||| |||| | | |||||| | Sbjct 39295 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAG 39236 Query 119484 TCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 | ||| | || ||||||| || | ||||| | ||||| || |||| | ||| ||||| Sbjct 39235 TTGTACGACTGCAAGACGCGCTCG-ATGTCGTGACCGTGGATGCCGACGGCGACACGCAT 39177 Query 119543 AAACATGT 119550 | ||||| Sbjct 39176 GAGCATGT 39169 >seq44 Length=1311234 Score = 136 bits (150), Expect = 5e-27 Identities = 341/506 (67%), Gaps = 23/506 (5%) Strand=Plus/Plus Query 179683 CCCTTGGAAGCCTTGATGATTGGTGTCACCA--TTGAGACCACAAACCC--CAACTTGAG 179738 ||||||| ||||||| ||| || || | | | ||| | | || ||| || |||||| Sbjct 1114685 CCCTTGGTTGCCTTGACGATGGGGGTGATGAACTCGAG-CAAGAAGCCCTTCAGCTTGAG 1114743 Query 179739 GAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 179798 | ||| || | |||| | || | |||| ||| |||||||||||||| || ||||| Sbjct 1114744 CAACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATC 1114803 Query 179799 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGATA 179858 || |||| ||| | ||| ||||| ||| || || || ||| | || || || Sbjct 1114804 GTGATCCTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCAGTGTA 1114863 Query 179859 ATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT 179918 | ||||| || || ||||||||||||| ||||| | ||||| ||| || | ||| Sbjct 1114864 GACTTTACCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGT 1114919 Query 179919 -GAGTTGCGCC---ACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACA 179974 ||| | ||| | | || || || || || |||| || || | ||||| | Sbjct 1114920 CGAGGAGGGCCTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGGAAGA 1114979 Query 179975 CACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAAT 180034 |||| |||| || ||||| || |||| ||||| | || ||||| | ||| ||||||| Sbjct 1114980 CACCATAGTTGTCTCGACCGACGACAGCCAGACCCGACACGGCGAGCGCCTTGGCGGAAT 1115039 Query 180035 CACCCTCCGTCACGATGAGCGTACACTT--TCCAGATTGTGCCGTCCCTGCCTTGTTCGC 180092 | || || |||| ||||||||| ||||| || | | | ||| || || | |||||| Sbjct 1115040 CTCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTGGTTCGC 1115097 Query 180093 GTCGTCCAACTTGGGAATACCAGTAATTTTGGA---CTTACGAGCGCCATCTGTCTTCTT 180149 || || | |||| || ||| || || || |||| | || || |||||||| Sbjct 1115098 ATCCTCGAGCTTGACAAGACCCGTGATACGCGATCGCTTATG---TCCGTCCGTCTTCTT 1115154 Query 180150 GAGTTCCTTCATCTCCTTGAACTTGG 180175 ||| || || ||||||||||| Sbjct 1115155 GAGCATCTGGTCCTGCTTGAACTTGG 1115180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434140929720