Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq45 147 3e-30 seq27 145 9e-30 seq44 122 1e-22 seq89 111 2e-19 >seq45 Length=1063883 Score = 147 bits (162), Expect = 3e-30 Identities = 524/808 (65%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| |||| || || || | ||||| || || Sbjct 39161 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGT 39220 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | |||| ||||| | || || ||||| Sbjct 39221 CTTGCAGTCGTACAACTTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTT 39280 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || | | ||||| || Sbjct 39281 CAACGCCGGAACGCCTCACCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACGA 39340 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || ||||| | || || | | ||| |||| ||||| ||| || || Sbjct 39341 TTCGATTGAAGGCATCTACGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 39400 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| || || Sbjct 39401 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCCGGCACG 39458 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||||| | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 39459 AATGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 39518 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||| ||| Sbjct 39519 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 39575 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | |||||||| || | || ||||| || | ||||| | ||| Sbjct 39576 CACGCCGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGC 39635 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| |||||||||||||| |||||||||||| || | || |||| Sbjct 39636 GCT--CGTGATCTCTTCTTTGCTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGG 39693 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | ||| | ||||| || || | | | || || || ||| ||| | | | Sbjct 39694 CCGCCGGCGACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACG 39753 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | || |||||| | | | | | || ||||| | || || || || | |||| Sbjct 39754 GCGAAGAGTTTCGCGTCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA 39813 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || || | | | ||| | || |||||| | | || ||| || || | || Sbjct 39814 TCCCCGC-GCAAAAGCTTTGGTATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCG 39872 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGA-GTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| |||| ||| || ||||| | || |||||||| | || ||| Sbjct 39873 TTCATGCTCTACAAGGACG-CTGCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGAT 39931 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATC 105016 |||| || || || || || |||||| Sbjct 39932 CAAGTCGTCGAACCTTTGCACTGAAATC 39959 >seq27 Length=1194495 Score = 145 bits (160), Expect = 9e-30 Identities = 274/395 (69%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| ||| || ||| || || || ||| | Sbjct 53123 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCC 53182 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7350 ||| ||| ||||||||||| || ||| ||||||||| | ||| | | ||| || Sbjct 53183 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGG-TTTCTG 53241 Query 7351 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7410 | ||||||| || ||||||||||| |||| ||| || ||| ||| ||| | ||||| Sbjct 53242 GATCGTCAAGAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAA 53301 Query 7411 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7468 ||| || || ||| | || ||| ||| ||| ||||| | |||||| | ||| | | || Sbjct 53302 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTC 53359 Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528 | ||| | ||| || |||| | | | | | || ||||| | || | | Sbjct 53360 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGT 53419 Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 7588 |||||||| |||||| ||||| || || | |||||| | ||||| || ||||| Sbjct 53420 GATTGGGGACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACC 53479 Query 7589 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 ||||||| | ||| | || |||||||||||||| Sbjct 53480 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 53514 >seq44 Length=1311234 Score = 122 bits (134), Expect = 1e-22 Identities = 248/360 (69%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 1114772 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1114831 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || ||| | |||||||| || |||||||||||| Sbjct 1114832 TTGCCGTAACGGAGCGAGTCGACGTCAGTGTAGACTTTACCCTGCTGCAGACCCAAGATC 1114891 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT-GAGCTGTG---TGACAGAGGCATCGC 169334 | ||||| ||| ||||| ||| || | ||| ||| | | || | | || || | Sbjct 1114892 TGCTTGA--TCGCTTGAA-TCTCGGCAT--TGTCGAGGAGGGCCTTGCCCGCCGCTTCAC 1114946 Query 169335 GAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGG 169394 | || || |||| || || | ||||||||||| |||| || ||||| ||||| | Sbjct 1114947 GCACGTTGAGCAACTTTCCTCGCAAGGGGAAGACACCATAGTTGTCTCGACCGACGACAG 1115006 Query 169395 AGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454 ||||||| || ||||| | ||| || || || || ||||| | ||||||||| || | Sbjct 1115007 CCAGACCCGACACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACT 1115066 Query 169455 T--TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 169512 | || | | | |||||| || | ||||||||| || | ||| || ||| || || Sbjct 1115067 TGGACCCGTTCCT--CGTACCAGCGTGGTTCGCATCCTCGAGCTTGACAAGACCCGTGAT 1115124 >seq89 Length=907297 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 275568 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 275509 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| |||||| |||||||||| | ||| | || ||| Sbjct 275508 GAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 275449 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| || ||||||||| Sbjct 275448 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAAC 275389 Query 7412 CATGAATCACC 7422 || || || || Sbjct 275388 CACGAGTCCCC 275378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259801165880