Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq45 147 3e-30
seq27 145 9e-30
seq44 122 1e-22
seq89 111 2e-19
>seq45
Length=1063883
Score = 147 bits (162), Expect = 3e-30
Identities = 524/808 (65%), Gaps = 21/808 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| ||||||| || ||| |||| || || || | ||||| || ||
Sbjct 39161 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGT 39220
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
|||| || | ||| || |||||| | | |||| ||||| | || || |||||
Sbjct 39221 CTTGCAGTCGTACAACTTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTT 39280
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| || || || || || || | || || ||||| || | | ||||| ||
Sbjct 39281 CAACGCCGGAACGCCTCACCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACGA 39340
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| || | || ||||| | || || | | ||| |||| ||||| ||| || ||
Sbjct 39341 TTCGATTGAAGGCATCTACGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 39400
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518
||||| || || |||||| | | | || | ||| || ||| || ||
Sbjct 39401 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCCGGCACG 39458
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
||||| | || | || || | || ||||| || || | ||| ||| ||||||||
Sbjct 39459 AATGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 39518
Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632
|| | |||| ||| ||||| ||| | |||| |||| || ||||| |||
Sbjct 39519 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 39575
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690
||||| || || | |||||||| || | || ||||| || | ||||| | |||
Sbjct 39576 CACGCCGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGC 39635
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | || |||||||||| |||||||||||||| |||||||||||| || | || ||||
Sbjct 39636 GCT--CGTGATCTCTTCTTTGCTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGG 39693
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810
||| | ||| | ||||| || || | | | || || || ||| ||| | | |
Sbjct 39694 CCGCCGGCGACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACG 39753
Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870
| || |||||| | | | | | || ||||| | || || || || | ||||
Sbjct 39754 GCGAAGAGTTTCGCGTCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA 39813
Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
| || || || | | | ||| | || |||||| | | || ||| || || | ||
Sbjct 39814 TCCCCGC-GCAAAAGCTTTGGTATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCG 39872
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGA-GTAATCAAAAGAATTTGGGTGTGAT 104988
| |||||| ||||| |||| ||| || ||||| | || |||||||| | || |||
Sbjct 39873 TTCATGCTCTACAAGGACG-CTGCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGAT 39931
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATC 105016
|||| || || || || || ||||||
Sbjct 39932 CAAGTCGTCGAACCTTTGCACTGAAATC 39959
>seq27
Length=1194495
Score = 145 bits (160), Expect = 9e-30
Identities = 274/395 (69%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291
||| | ||||||||||| || || ||| ||| ||| || ||| || || || ||| |
Sbjct 53123 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCC 53182
Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 7350
||| ||| ||||||||||| || ||| ||||||||| | ||| | | ||| ||
Sbjct 53183 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGG-TTTCTG 53241
Query 7351 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7410
| ||||||| || ||||||||||| |||| ||| || ||| ||| ||| | |||||
Sbjct 53242 GATCGTCAAGAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAA 53301
Query 7411 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7468
||| || || ||| | || ||| ||| ||| ||||| | |||||| | ||| | | ||
Sbjct 53302 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAGATCTCGCGA-GCTGTC 53359
Query 7469 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGA 7528
| ||| | ||| || |||| | | | | | || ||||| | || | |
Sbjct 53360 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGT 53419
Query 7529 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 7588
|||||||| |||||| ||||| || || | |||||| | ||||| || |||||
Sbjct 53420 GATTGGGGACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACC 53479
Query 7589 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623
||||||| | ||| | || ||||||||||||||
Sbjct 53480 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 53514
>seq44
Length=1311234
Score = 122 bits (134), Expect = 1e-22
Identities = 248/360 (69%), Gaps = 14/360 (4%)
Strand=Plus/Plus
Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219
|||| || |||||||| ||||| || || |||| ||| ||| | ||||||||||||
Sbjct 1114772 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 1114831
Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279
|| || || ||| | || || ||| | |||||||| || ||||||||||||
Sbjct 1114832 TTGCCGTAACGGAGCGAGTCGACGTCAGTGTAGACTTTACCCTGCTGCAGACCCAAGATC 1114891
Query 169280 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT-GAGCTGTG---TGACAGAGGCATCGC 169334
| ||||| ||| ||||| ||| || | ||| ||| | | || | | || || |
Sbjct 1114892 TGCTTGA--TCGCTTGAA-TCTCGGCAT--TGTCGAGGAGGGCCTTGCCCGCCGCTTCAC 1114946
Query 169335 GAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGG 169394
| || || |||| || || | ||||||||||| |||| || ||||| ||||| |
Sbjct 1114947 GCACGTTGAGCAACTTTCCTCGCAAGGGGAAGACACCATAGTTGTCTCGACCGACGACAG 1115006
Query 169395 AGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT 169454
||||||| || ||||| | ||| || || || || ||||| | ||||||||| || |
Sbjct 1115007 CCAGACCCGACACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACT 1115066
Query 169455 T--TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 169512
| || | | | |||||| || | ||||||||| || | ||| || ||| || ||
Sbjct 1115067 TGGACCCGTTCCT--CGTACCAGCGTGGTTCGCATCCTCGAGCTTGACAAGACCCGTGAT 1115124
>seq89
Length=907297
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291
||| | ||||| ||||| || |||||| ||| || || ||| || || || || |
Sbjct 275568 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 275509
Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351
||| ||| ||||||||||| |||||| |||||||||| | ||| | || |||
Sbjct 275508 GAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 275449
Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411
||||||| || ||||||||||| |||| ||| |||||| ||| || |||||||||
Sbjct 275448 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAAC 275389
Query 7412 CATGAATCACC 7422
|| || || ||
Sbjct 275388 CACGAGTCCCC 275378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259801165880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |