Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq45 340 2e-88 seq44 143 3e-29 >seq45 Length=1063883 Score = 340 bits (376), Expect = 2e-88 Identities = 536/765 (70%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| | ||| ||| || ||||| Sbjct 39175 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCGTACA 39234 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | | ||||| || |||||| |||| || || |||||||| || ||| Sbjct 39235 ACTTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 39294 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||| |||||||| |||||||||| || ||||| || |||| Sbjct 39295 CTCACCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACGATTCGATTGAAGGCA 39354 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| ||| || | |||||||||| | |||||||||||| | Sbjct 39355 TCTACGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 39414 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || ||||| ||| | | | | Sbjct 39415 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAATGGCTACTCGAACG 39474 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 39475 GCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 39534 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||||||| | | |||| Sbjct 39535 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGT 39594 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 39595 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 39654 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||| |||||||| || ||||||||| | || ||| | || || ||| ||| Sbjct 39655 CTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGACTGGCCCCTCT 39714 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||||||||| | |||||||| || |||||| || ||| Sbjct 39715 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAGTTTCGCGTCTTGT 39774 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||||| | || |||| || | ||| Sbjct 39775 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 39833 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 |||| || ||| | |||||| || || || | |||| |||| ||||||||| | Sbjct 39834 TATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTACAAGGACGCT 39893 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| | || ||||| |||||| | ||| ||||| ||| Sbjct 39894 GCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 39938 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | || || || Sbjct 40897 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACCATTATCGATCTGTC 40956 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 40957 CGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 41016 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || |||| || | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 41017 GACAATGGCGCAGCTCACGTCGATGCACTTCTACGGTTGGAAGCGAGGACTGAAGACGGG 41076 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || |||||| Sbjct 41077 CATGTACTACTTGCGCACGCGCGCC 41101 >seq44 Length=1311234 Score = 143 bits (158), Expect = 3e-29 Identities = 308/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || | ||| || |||| | ||| || | || ||| ||| Sbjct 1113891 ATCCCGTTCCGATACCATCCGAACCATTAACCAAAGCCATGGGGATGATGGGGATGTACC 1113950 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | | |||||| || || | | ||||| || ||| | ||||| | Sbjct 1113951 AAGACGGCTCGATGTTTTGACCATCGTCGTTGAGGTATTCCAGCACGTTGTCATCAGCGG 1114010 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| || | | ||| || || ||| | | ||| |||||||||||| | |||| | Sbjct 1114011 GATGAAAGACGCTTCGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAAC--GAGCCGAA 1114066 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| || || || || || ||||| | |||| Sbjct 1114067 GCCGCGTCTTTACCACCTTGCAGACGCGTACCGAATTGACCGTTCGGGTCGAGAATGTTG 1114126 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || ||||| | || ||||| |||| |||| Sbjct 1114127 AGGTTGTTGGACCCGACGAACTGTTGCGCCAAGCCAATGATGGTGCCTTGCAAACTCAAA 1114186 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || ||| || | ||||| || Sbjct 1114187 TCACCGTGATGGTACGCCGAGTGCTCAGCGACGTAACCGCCCAGTTGTCCGACCTTGATC 1114246 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||||| || Sbjct 1114247 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAAT 1114306 Query 152290 CCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || | || |||||||||||| | |||| Sbjct 1114307 CCATCAATGACAGAGGGAATCGAACGCACGTTGTC 1114341 Score = 114 bits (126), Expect = 1e-20 Identities = 205/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||||||||| Sbjct 1114046 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCGAATTGA 1114105 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||||| | Sbjct 1114106 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAAGCCAATG 1114165 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 1114166 ATGGTGCCTTGCAAACTCAAATCACCGTGATGGTACGCCGAGTGCTCAGCGACGTAACCG 1114225 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 |||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 1114226 CCCAGTTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 1114285 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600 ||||| |||| || || | ||||| || ||||| ||||||||| | |||| Sbjct 1114286 TTGCGTTGACCCGGTTTGAATCCATCAATGAC-AGAGGGAATCGAACGCACGTTGTC 1114341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215062892600