Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq45 340 2e-88
seq44 143 3e-29
>seq45
Length=1063883
Score = 340 bits (376), Expect = 2e-88
Identities = 536/765 (70%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | || ||||||||| ||||| | ||| ||| || |||||
Sbjct 39175 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCGTACA 39234
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | | ||||| || |||||| |||| || || |||||||| || |||
Sbjct 39235 ACTTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 39294
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|||||| ||| | ||| ||| |||||||| |||||||||| || ||||| || ||||
Sbjct 39295 CTCACCCGCAGCTCTCGTCCTGTTTCCTGGTCACGATGAAGGACGATTCGATTGAAGGCA 39354
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| ||| || | |||||||||| | |||||||||||| |
Sbjct 39355 TCTACGACACACTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 39414
Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| | ||| |||| |||| |||| | ||| || ||||| ||| | | | |
Sbjct 39415 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAATGGCTACTCGAACG 39474
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||||| || |||||||| |||| ||||||||| || || |||||| |||| |||||
Sbjct 39475 GCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 39534
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||| || | ||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 39535 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGT 39594
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| || || || || ||| || || | || || | ||| ||||| || || |
Sbjct 39595 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 39654
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
|||| |||||||| || ||||||||| | || ||| | || || ||| |||
Sbjct 39655 CTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGACTGGCCCCTCT 39714
Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792
| ||||| ||| |||||||||||| | |||||||| || |||||| || |||
Sbjct 39715 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAGTTTCGCGTCTTGT 39774
Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851
||| || |||| | |||||||| |||||||| | || |||| || | |||
Sbjct 39775 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 39833
Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911
|||| || ||| | |||||| || || || | |||| |||| ||||||||| |
Sbjct 39834 TATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTACAAGGACGCT 39893
Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956
| ||| | || ||||| |||||| | ||| ||||| |||
Sbjct 39894 GCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 39938
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785
|||||||| || ||| ||| || |||||| | | || |||| | || || ||
Sbjct 40897 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACCATTATCGATCTGTC 40956
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|| || || ||||| | ||| |||||||| || || || |||||| | || || ||
Sbjct 40957 CGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 41016
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| |||| || | | ||||||||||| ||||| |||||| ||||| ||||||||
Sbjct 41017 GACAATGGCGCAGCTCACGTCGATGCACTTCTACGGTTGGAAGCGAGGACTGAAGACGGG 41076
Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930
|||||||| |||| || ||||||
Sbjct 41077 CATGTACTACTTGCGCACGCGCGCC 41101
>seq44
Length=1311234
Score = 143 bits (158), Expect = 3e-29
Identities = 308/455 (68%), Gaps = 8/455 (2%)
Strand=Plus/Plus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
|||| || ||||| || || | ||| || |||| | ||| || | || ||| |||
Sbjct 1113891 ATCCCGTTCCGATACCATCCGAACCATTAACCAAAGCCATGGGGATGATGGGGATGTACC 1113950
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
| |||||| | | |||||| || || | | ||||| || ||| | ||||| |
Sbjct 1113951 AAGACGGCTCGATGTTTTGACCATCGTCGTTGAGGTATTCCAGCACGTTGTCATCAGCGG 1114010
Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049
||| || | | ||| || || ||| | | ||| |||||||||||| | |||| |
Sbjct 1114011 GATGAAAGACGCTTCGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAAC--GAGCCGAA 1114066
Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
||||| || || |||||| ||| ||||| || || || || || ||||| | ||||
Sbjct 1114067 GCCGCGTCTTTACCACCTTGCAGACGCGTACCGAATTGACCGTTCGGGTCGAGAATGTTG 1114126
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169
|||||||||| || ||||| | || ||||| | || ||||| |||| ||||
Sbjct 1114127 AGGTTGTTGGACCCGACGAACTGTTGCGCCAAGCCAATGATGGTGCCTTGCAAACTCAAA 1114186
Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229
|||||||| || ||||||| ||||| |||| ||| || ||| || | ||||| ||
Sbjct 1114187 TCACCGTGATGGTACGCCGAGTGCTCAGCGACGTAACCGCCCAGTTGTCCGACCTTGATC 1114246
Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| ||||| || ||||| || || | | |||||||| || ||||| ||
Sbjct 1114247 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAAT 1114306
Query 152290 CCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
|| || | || |||||||||||| | ||||
Sbjct 1114307 CCATCAATGACAGAGGGAATCGAACGCACGTTGTC 1114341
Score = 114 bits (126), Expect = 1e-20
Identities = 205/297 (69%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| || || || || ||||| |||||||||||||||||
Sbjct 1114046 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCGAATTGA 1114105
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || | | ||| |||||||||| || || || | ||| |||||| |
Sbjct 1114106 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAAGCCAATG 1114165
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || ||||| | ||| ||||| || || ||||||| ||||| || ||||| ||
Sbjct 1114166 ATGGTGCCTTGCAAACTCAAATCACCGTGATGGTACGCCGAGTGCTCAGCGACGTAACCG 1114225
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|||| || | ||||| || || ||||| || ||||| ||| | | | |||
Sbjct 1114226 CCCAGTTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 1114285
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600
||||| |||| || || | ||||| || ||||| ||||||||| | ||||
Sbjct 1114286 TTGCGTTGACCCGGTTTGAATCCATCAATGAC-AGAGGGAATCGAACGCACGTTGTC 1114341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215062892600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |