Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq87 107 2e-18 >seq87 Length=1238431 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || |||| || || || |||| || Sbjct 436504 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 436563 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||||||||| || |||||||| ||||| | ||| | || ||| |||| | | Sbjct 436564 CAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGT-CTT 436622 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || |||||| || || | |||||| | Sbjct 436623 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTC 436681 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || |||||||||||||| Sbjct 436682 TTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 436713 Score = 102 bits (112), Expect = 7e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || ||||| || || || || |||| || Sbjct 436732 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCGTCCTC 436791 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||| | ||| | || ||| |||| | | Sbjct 436792 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGT-CTT 436850 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || ||||| || || | ||||| | Sbjct 436851 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATCGTC 436909 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || ||||||||||| ||||||||||||| Sbjct 436910 TTGCCAGTGAGCGTTTTAACGAAGATTTGCATCT 436943 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| || || || || || || |||| || || || |||| || Sbjct 678179 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678238 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||||| ||| | || ||| |||||| Sbjct 678239 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678298 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| || ||||| || || | |||||| | || Sbjct 678299 GATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTT 678358 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || || |||||||| Sbjct 678359 GCCGGTCAGCGTCTTGACGAAAATTTGCAT 678388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| || || || || || || |||| || || || |||| || Sbjct 678407 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678466 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||||| ||| | || ||| |||||| Sbjct 678467 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 678526 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || ||||| || || | |||||| | | Sbjct 678527 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 678585 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||| || || || || |||||||||| Sbjct 678586 TGCCTGTCAAAGTCTTGACGAAAATTTGCATCT 678618 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| || || || || || || |||| || || || |||| || Sbjct 677951 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 678010 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||||| || | || ||| |||||| Sbjct 678011 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 678070 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||| || ||||| || || | |||||| | || Sbjct 678071 GATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTT 678130 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || || |||||||| Sbjct 678131 GCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544882793081