Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq47 116 9e-21
seq44 109 1e-18
seq87 93.3 1e-13
>seq47
Length=302882
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| | || || || ||||| |||||||||||||| || || | ||| |
Sbjct 149742 GAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGAGTGCG 149683
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || ||||| ||||| || | |||||||| | || ||| |||||
Sbjct 149682 GCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTC 149623
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| ||||| || || ||||| | || | |||| || ||| || || || ||
Sbjct 149622 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 149563
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097
|| || |||||||| |||||||| |||||||
Sbjct 149562 GATCGTCTTGCCCGTAAGAGTCTTGACGAAGA 149531
>seq44
Length=1311234
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || || || ||||| |||||||||||||| || || | ||| |
Sbjct 308772 GAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGAGTGCG 308713
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || ||||| ||||| || | |||||||| | | ||| |||||
Sbjct 308712 GCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGGATGCCTTC 308653
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| ||||| || || ||||| | || | |||| || ||| || || || ||
Sbjct 308652 CTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGT 308593
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103
|| || ||||||||||| ||||| ||||||| ||||
Sbjct 308592 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 308555
>seq87
Length=1238431
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || |||||||||||||| || | || | || || || |
Sbjct 436735 CAAG-TGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCGTCCTCGA 436793
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| | | ||||||||| | | || || ||||| |||||||
Sbjct 436794 GCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGAA 436853
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||| | || | ||||||| ||| || || || || || || ||||
Sbjct 436854 TCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATCGTCTTGC 436913
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || ||||||| |||||
Sbjct 436914 CAGTGAGCGTTTTAACGAAGATTTGCAT 436941
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | |||||| || ||||| || || ||||||||||||| | || | || ||
Sbjct 436273 GAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCGTC 436332
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || |||||||| | | ||| ||||| | | || || ||||| ||
Sbjct 436333 CTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTC 436392
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||| || ||||| | || | ||||||| ||| || || || ||||| ||
Sbjct 436393 TTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGACCTCGAGCGTAATCGT 436452
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||| ||||| | |||||
Sbjct 436453 CTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 436485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153818774683927
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |