Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq79 248 8e-61 seq70 125 6e-24 seq85 113 4e-20 seq74 105 6e-18 seq48 89.7 5e-13 >seq79 Length=1733205 Score = 248 bits (274), Expect = 8e-61 Identities = 568/847 (67%), Gaps = 6/847 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||||||||| | ||||| ||||| |||||| | || |||||| | ||||| Sbjct 51219 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 51160 Query 23081 GTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGC 23138 || || || || | || |||| |||||||| | || | ||||| | ||||| | |||| Sbjct 51159 GTGCAAAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGC 51101 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | | ||||||||||||||| |||| |||| || |||||||| | |||| ||||| Sbjct 51100 A-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCAT 51042 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257 ||| | | || ||| | | |||| | | | ||| || | ||||| || | | Sbjct 51041 ACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCG 50983 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| || ||| || | ||||| ||| |||||||| | || || || Sbjct 50982 AACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAG 50923 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 | ||| ||| | | || || || ||| || ||||| || ||||| ||| Sbjct 50922 AAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGA 50863 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 || |||| || || || ||||| || ||||| |||||| |||||| | |||| Sbjct 50862 GCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGG 50803 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || || || ||||| || ||||||||||||||||| | || || || || || | ||| Sbjct 50802 AACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTG 50743 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| || || |||||||| || || ||||||||||| || | ||||| || |||| Sbjct 50742 TTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATG 50683 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| || ||| ||| || | || || | || || | |||||| | | Sbjct 50682 CCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATG 50623 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 ||||| || || ||| | | || || || | |||||| || || ||||||||| Sbjct 50622 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAG 50563 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||| || || || || || ||| ||||| |||||| || || | |||| | Sbjct 50562 ATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGA 50503 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 ||||| |||| ||| || ||||| |||||| || ||||| | | ||||| | Sbjct 50502 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAG 50443 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 ||||||| | | | || || ||||| | ||||| || |||| |||||| ||||| Sbjct 50442 TTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 50383 Query 23858 ATCATGT 23864 | ||||| Sbjct 50382 AGCATGT 50376 Score = 109 bits (120), Expect = 5e-19 Identities = 114/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591 || || |||||| ||||| ||||||||||| ||||| ||| |||||||| | | Sbjct 51726 CCGAGGATCTGACTCGTCGACGCGGTCGGCATTGGCGCGCACACGAGCGAGTTGCGGAGA 51667 Query 22592 CCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651 |||||||||| ||| || ||||||| |||||||||||||||||| ||| |||||| Sbjct 51666 CCGTGCTTTGCAATCTTCTCCTTGAGCTCGGACCAGTCCCACAGATCGCTCGGGGTCACA 51607 Query 22652 TTGTCCCACATATCGTATTGCAACACGCC 22680 |||||| ||||| |||||| |||| Sbjct 51606 ---CCCCACAAGTCGTACTGCAACTCGCC 51581 >seq70 Length=1260279 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||||||||| |||||||| |||| || || | || Sbjct 680305 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 680246 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 680245 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 680186 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 680185 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 680126 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || || |||| || | || | ||||||| Sbjct 680125 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 680077 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| ||||| || |||| || || |||| Sbjct 438178 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 438119 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||| ||| | || || ||||| Sbjct 438118 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 438060 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||||||||| ||| | || ||| | || | |||||| || Sbjct 438059 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 438000 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| |||||| |||| || Sbjct 437999 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 437967 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 680077 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 680018 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 680017 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 679958 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 679957 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 679898 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || || |||| || | || | ||||||| Sbjct 679897 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 679849 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 679849 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 679790 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 679789 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 679730 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 679729 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 679670 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| || || |||| || Sbjct 679669 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 679638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || ||||| ||||||||| |||| || || | || Sbjct 438634 ATGCAAATCTTCGTTAAAACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGTCATCA 438575 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||| ||| | || || ||||| Sbjct 438574 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 438516 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | || ||| || | ||||| || Sbjct 438515 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGATTACAA 438456 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| || || |||| ||| | || | || |||| Sbjct 438455 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGGTA 438406 >seq85 Length=620530 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 || |||||| ||||| |||||||| || ||||| ||||||||| |||| || || |||| Sbjct 150973 CAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 151032 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | |||||||||||| | ||||| |||| Sbjct 151033 CGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACC 151091 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| ||||| || || || ||||| ||| | || || ||| | || || | Sbjct 151092 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 151151 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || ||||| || || |||| || Sbjct 151152 ACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 151185 >seq74 Length=1285146 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| ||||| ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 284502 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 284561 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | || ||||||||| Sbjct 284562 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCCGACCAG 284620 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || ||| | || || ||| Sbjct 284621 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 284680 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| || || |||| || Sbjct 284681 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 284712 >seq48 Length=317269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| |||||||||| | || |||| || |||||| ||| |||||| | ||||| Sbjct 263101 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 263042 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || ||| ||| | | ||||| | || | | ||||| Sbjct 263041 GGCAACGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 262982 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || ||||||||||| || ||||| |||| || |||||| ||||||| || Sbjct 262981 CACGTGCTCGCCTTTTTCGCCGCTTCGGATGGGGTTGTGAATGAGAATCTGGTCGAGAGG 262922 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 || ||| || ||||| | |||||||| |||||||| || ||||| Sbjct 262921 TTCTCAAGCGAGGTGCAGTCCGCCGAGGCGAGGTGCTTTTATGGGTTTCA 262872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765670057520