Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12-
23] 131 sequences; 28,837,994 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq79 248 8e-61
seq70 125 6e-24
seq85 113 4e-20
seq74 105 6e-18
seq48 89.7 5e-13
>seq79
Length=1733205
Score = 248 bits (274), Expect = 8e-61
Identities = 568/847 (67%), Gaps = 6/847 (1%)
Strand=Plus/Minus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||||||||| | ||||| ||||| |||||| | || |||||| | |||||
Sbjct 51219 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 51160
Query 23081 GTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGC 23138
|| || || || | || |||| |||||||| | || | ||||| | ||||| | ||||
Sbjct 51159 GTGCAAAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGC 51101
Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198
| | ||||||||||||||| |||| |||| || |||||||| | |||| |||||
Sbjct 51100 A-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCAT 51042
Query 23199 GCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257
||| | | || ||| | | |||| | | | ||| || | ||||| || | |
Sbjct 51041 ACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCG 50983
Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317
|||| || ||| || | ||||| ||| |||||||| | || || ||
Sbjct 50982 AACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAG 50923
Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377
| ||| ||| | | || || || ||| || ||||| || ||||| |||
Sbjct 50922 AAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGA 50863
Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437
|| |||| || || || ||||| || ||||| |||||| |||||| | ||||
Sbjct 50862 GCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGG 50803
Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497
|| || || ||||| || ||||||||||||||||| | || || || || || | |||
Sbjct 50802 AACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTG 50743
Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557
||||| || || |||||||| || || ||||||||||| || | ||||| || ||||
Sbjct 50742 TTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATG 50683
Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617
||||| || ||| ||| || | || || | || || | |||||| | |
Sbjct 50682 CCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATG 50623
Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677
||||| || || ||| | | || || || | |||||| || || |||||||||
Sbjct 50622 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAG 50563
Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737
||||| || || || || || ||| ||||| |||||| || || | |||| |
Sbjct 50562 ATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGA 50503
Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797
||||| |||| ||| || ||||| |||||| || ||||| | | ||||| |
Sbjct 50502 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAG 50443
Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857
||||||| | | | || || ||||| | ||||| || |||| |||||| |||||
Sbjct 50442 TTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 50383
Query 23858 ATCATGT 23864
| |||||
Sbjct 50382 AGCATGT 50376
Score = 109 bits (120), Expect = 5e-19
Identities = 114/149 (77%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591
|| || |||||| ||||| ||||||||||| ||||| ||| |||||||| | |
Sbjct 51726 CCGAGGATCTGACTCGTCGACGCGGTCGGCATTGGCGCGCACACGAGCGAGTTGCGGAGA 51667
Query 22592 CCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651
|||||||||| ||| || ||||||| |||||||||||||||||| ||| ||||||
Sbjct 51666 CCGTGCTTTGCAATCTTCTCCTTGAGCTCGGACCAGTCCCACAGATCGCTCGGGGTCACA 51607
Query 22652 TTGTCCCACATATCGTATTGCAACACGCC 22680
|||||| ||||| |||||| ||||
Sbjct 51606 ---CCCCACAAGTCGTACTGCAACTCGCC 51581
>seq70
Length=1260279
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||| |||||||||| |||||||| |||| || || | ||
Sbjct 680305 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 680246
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 680245 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 680186
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 680185 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 680126
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| || || |||| || | || | |||||||
Sbjct 680125 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 680077
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| ||||| || |||| || || ||||
Sbjct 438178 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 438119
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | | ||||||| ||| | || || |||||
Sbjct 438118 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 438060
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||||||||| ||| | || ||| | || | |||||| ||
Sbjct 438059 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 438000
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || ||||| |||||| |||| ||
Sbjct 437999 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 437967
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | ||
Sbjct 680077 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 680018
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 680017 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 679958
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 679957 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 679898
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| || || |||| || | || | |||||||
Sbjct 679897 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 679849
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | ||
Sbjct 679849 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 679790
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 679789 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 679730
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 679729 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 679670
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || |||||||| || || |||| ||
Sbjct 679669 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 679638
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || || || || ||||| ||||||||| |||| || || | ||
Sbjct 438634 ATGCAAATCTTCGTTAAAACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGTCATCA 438575
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | | ||||||| ||| | || || |||||
Sbjct 438574 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 438516
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||||||||| ||| | || ||| || | ||||| ||
Sbjct 438515 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGATTACAA 438456
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || ||||| || || |||| ||| | || | || ||||
Sbjct 438455 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGGTA 438406
>seq85
Length=620530
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|| |||||| ||||| |||||||| || ||||| ||||||||| |||| || || ||||
Sbjct 150973 CAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 151032
Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
||||| |||| | ||||| || ||| | |||||||||||| | ||||| ||||
Sbjct 151033 CGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACC 151091
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||| ||||| || || || ||||| ||| | || || ||| | || || |
Sbjct 151092 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 151151
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||| ||||| || ||||| || || |||| ||
Sbjct 151152 ACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 151185
>seq74
Length=1285146
Score = 105 bits (116), Expect = 6e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253
||||||| ||||| ||||| || || ||||| || |||||| |||| || || ||||||
Sbjct 284502 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 284561
Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| |||| | ||||| || ||| | |||||||||||| | || |||||||||
Sbjct 284562 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCCGACCAG 284620
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || || || ||||| ||| | || || ||| | || || |||
Sbjct 284621 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 284680
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || ||||| || || |||| ||
Sbjct 284681 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 284712
>seq48
Length=317269
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| |||||||||| | || |||| || |||||| ||| |||||| | |||||
Sbjct 263101 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 263042
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || || ||| ||| | | ||||| | || | | |||||
Sbjct 263041 GGCAACGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 262982
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
|||||| | || ||||||||||| || ||||| |||| || |||||| ||||||| ||
Sbjct 262981 CACGTGCTCGCCTTTTTCGCCGCTTCGGATGGGGTTGTGAATGAGAATCTGGTCGAGAGG 262922
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
|| ||| || ||||| | |||||||| |||||||| || |||||
Sbjct 262921 TTCTCAAGCGAGGTGCAGTCCGCCGAGGCGAGGTGCTTTTATGGGTTTCA 262872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765670057520
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