Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq70 104 2e-17 >seq70 Length=1260279 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || ||||| || | ||| ||||| | ||| | ||||| Sbjct 438425 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCGTCCTC 438484 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| |||| ||||| ||||| ||||| || || ||||| | Sbjct 438485 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 438544 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||||||| | ||| ||||| | ||||| || | ||||| || || Sbjct 438545 AATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATCGTCTT 438604 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| || ||||| ||||| Sbjct 438605 GCCAGTGAGCGTTTTAACGAAGATTTGCAT 438634 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||| | |||| ||||||||||| || |||||||| || | ||| || ||| Sbjct 679622 TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCG-- 679679 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||||| ||||| || || | ||||| |||| ||||| || ||| Sbjct 679680 GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGA 679739 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 ||||| || || ||||| | || || |||||||| | ||| ||||| | | ||| Sbjct 679740 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCG 679799 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||| || || || || || || || || || || ||||| Sbjct 679800 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || || ||||| || | | Sbjct 438168 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATG 438227 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||||| ||| || || ||||||| | | | Sbjct 438228 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCT 438285 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| ||||| || || ||||| | ||| || | ||||||| | ||| |||| Sbjct 438286 GTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGT 438345 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||||| || | |||||| || || ||||| || || || |||||||| |||| Sbjct 438346 CTGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCA 438405 Query 95007 T 95007 | Sbjct 438406 T 438406 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || |||||||| || | | Sbjct 680067 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATG 680126 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||| ||||| || || | ||||| |||| | Sbjct 680127 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCT 680184 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || ||||| || || ||||| | || || ||||||||| | ||| |||| Sbjct 680185 GCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGT 680244 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||| || || || || | ||| || || || || |||| Sbjct 680245 CCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCA 680304 Query 95007 T 95007 | Sbjct 680305 T 680305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || |||||||| || | | Sbjct 679839 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATG 679898 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||| ||||| || || | ||||| |||| | Sbjct 679899 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCT 679956 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || ||||| || || ||||| | || || |||||||| | ||| |||| Sbjct 679957 GCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGT 680016 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||| || || || || || || || || || || |||| Sbjct 680017 CTGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCA 680076 Query 95007 T 95007 | Sbjct 680077 T 680077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290465923160