Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12-
23] 131 sequences; 28,837,994 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq70 116 3e-21
seq74 107 2e-18
seq85 100 2e-16
>seq70
Length=1260279
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||||| || | || || |||| || ||||||||
Sbjct 438178 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 438119
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 438118 GACACGATCGACAACGTCAAGACCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGACCA 438060
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || || ||||| || | || || | |||||| | |||||||||
Sbjct 438059 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 438000
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || ||||| ||||| |||||
Sbjct 437999 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 437967
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || || | ||||| |||| || ||||||||
Sbjct 438406 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCA 438347
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 438346 GACACGATCGACAACGTCAAGACCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGACCA 438288
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||| ||||| || || || || | |||||| | ||| |||||
Sbjct 438287 ACAGCGTCTCATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACGCTCTCCGACTACAA 438228
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || ||||| || || |||||
Sbjct 438227 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCT 438195
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| || || | ||||| |||| || ||||| ||
Sbjct 680305 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 680246
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 680245 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 680186
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || || || | || || | |||||| | ||| |||||
Sbjct 680185 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 680126
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || |||||
Sbjct 680125 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 680094
>seq74
Length=1285146
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056
|| ||||||| || || ||||| | || || || ||||||| |||| || |||||||
Sbjct 284499 CAGTGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGT 284558
Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
| ||||| ||||| | ||| || ||| ||||| ||||| || || || ||||
Sbjct 284559 CCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACC 284618
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | || ||||||||||| || | || |||| |||||| | | || ||||
Sbjct 284619 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 284678
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| || || || || || || |||||
Sbjct 284679 ACATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 284712
>seq85
Length=620530
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060
|||||| || || |||||| | || || || | ||||| |||| || |||||||| ||
Sbjct 150976 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 151035
Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120
||| ||||| | ||| || ||| ||||| ||||| || || || ||||| ||
Sbjct 151036 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 151095
Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180
|| | || ||||||||||| || | || |||| |||||| | | || ||||| ||
Sbjct 151096 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACAT 151155
Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || ||
Sbjct 151156 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 151185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327308164765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |