Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq67 123 5e-23 seq28 95.1 2e-14 seq74 93.3 9e-14 >seq67 Length=2103683 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| |||||||| ||| | ||||| || |||| |||||| Sbjct 572579 GGTATCGTCGGCCCCAACGGTGCCGGTAAGTCGACCTTGATCAAGCTCTTGACGGGCGAG 572638 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || ||||||||||||| |||| | || |||||||| Sbjct 572639 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCATCCCAACTTGCGTGTCGCGTACGTCGCC 572698 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 572699 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAG 572758 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 572759 TGGCGTTA 572766 >seq28 Length=1557164 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || | | || |||||||| | Sbjct 437132 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 437191 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 437192 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 437251 Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 || | | |||||| || ||| ||| || | ||| |||| ||||| ||||||| Sbjct 437252 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 437309 Query 279877 CTGGCTTCCT 279886 | |||||||| Sbjct 437310 CGGGCTTCCT 437319 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || | | || |||||||| | Sbjct 462496 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 462555 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 462556 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 462615 Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 || | | |||||| || ||| ||| || | ||| |||| ||||| ||||||| Sbjct 462616 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 462673 Query 279877 CTGGCTTCCT 279886 | |||||||| Sbjct 462674 CGGGCTTCCT 462683 >seq74 Length=1285146 Score = 93.3 bits (102), Expect = 9e-14 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | ||||| || Sbjct 1091007 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTGTCGGGTCTGGCT 1090948 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| |||||||| | || || ||| ||||||||||||| Sbjct 1090947 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCCTTGCGAGGAAAGTTGCTCAACGTGCGT 1090888 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || ||| ||| || | || | ||||| |||||| || |||||||| ||| Sbjct 1090887 GAAGCGGCGG--GCAAGGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCT 1090830 Query 218015 TGGGTCTTCAGGTTGG-AAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGT 218072 ||||||| ||| || |||| | |||| || | || | || || ||||| ||| | Sbjct 1090829 TGGGTCTGCAGCAGGGTAAAGTC-TACACTGACGTCGAC-TCGCTCCGTTACGGCAAGCT 1090772 Query 218073 CATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATT 218112 |||| | ||| | ||| ||| || || || |||||| Sbjct 1090771 CATGATCATGGCCGATCAGGATCACGATGGATCGCACATT 1090732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||| Sbjct 968659 ATCGCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCG 968718 Query 142561 AGCCCCACATCGGGC 142575 |||||| |||||||| Sbjct 968719 AGCCCCGCATCGGGC 968733 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 959906 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 959847 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 959846 CCCGCATCGGGC 959835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835074840171