Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq70 127 5e-24 seq85 118 3e-21 seq76 114 3e-20 seq74 111 4e-19 seq82 86.0 1e-11 >seq70 Length=1260279 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| ||| || || || || |||||| Sbjct 679620 TGTCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCG 679679 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||||||| ||||| || | || || || |||||||||| ||||| || Sbjct 679680 GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGA 679739 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| || || || || || || || | || || || Sbjct 679740 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCG 679799 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 679800 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | ||||| ||| || || || || || || ||| Sbjct 437949 TGACCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCG 438008 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||||||| ||||| || | || || || |||||||||| |||||||| ||| Sbjct 438009 GAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGG---TCT 438065 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || || || || || | || ||||| || || | || ||| Sbjct 438066 GGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGAC 438125 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| |||||||| |||||||| ||||||||||| || ||||| Sbjct 438126 TCGACCTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 438178 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||||||||| ||||| || | || || || ||||| Sbjct 679886 TTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 679945 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || || ||| || || || || |||||||| || || || || Sbjct 679946 GATCAATCGCTGCTGG---TCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 680002 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || || || ||||||||||||||||| |||||||| ||||| Sbjct 680003 ATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTT 680062 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 680063 GACGAAAATTTGCAT 680077 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||||||||| ||||| || | || || || ||||| Sbjct 680114 TTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 680173 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| || || ||| || || || || |||||||| || || || || Sbjct 680174 GATCAATCGCTGCTGG---TCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 680230 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | || || || || ||||||||||||||||| || |||| |||||| Sbjct 680231 GTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTT 680290 Query 288459 GACGAATATCTGCAT 288473 |||||| || ||||| Sbjct 680291 GACGAAAATTTGCAT 680305 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||||||||| ||||| || || || || || || ||| Sbjct 438216 TCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAG 438275 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| |||||| || || || || || || || || | || ||| Sbjct 438276 ATGAGACGCTGTTG---GTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACG 438332 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || ||||||||||||||||| || || || |||||| Sbjct 438333 TTGTCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTG 438392 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 438393 ACAAAGATTTGCAT 438406 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | ||| || || ||||| || || || ||| Sbjct 438408 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 438467 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||||| ||||| || |||||| Sbjct 438468 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTG---GTCTGGG 438524 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || || || || | || ||||| || || | || || || Sbjct 438525 GGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCG 438584 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || || || || || ||||| || ||||| Sbjct 438585 ACCTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 438634 >seq85 Length=620530 Score = 118 bits (130), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| ||||| || || || | || || || || ||| Sbjct 151164 TCCTTTTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 151105 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| ||| ||||| || || ||||| || | || ||| Sbjct 151104 ATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACG 151048 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || ||||| ||||||||||| || || ||||||||| Sbjct 151047 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTG 150988 Query 288460 ACGAATATCTGC 288471 ||||| || ||| Sbjct 150987 ACGAAGATTTGC 150976 >seq76 Length=1206387 Score = 114 bits (126), Expect = 3e-20 Identities = 249/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || ||||||||||| || || || | ||||| | || | || Sbjct 68863 CCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTGGAGACCCCTCAATCCGAGACGAC 68922 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || || ||||| |||||||| || || |||||||||| || |||||| || Sbjct 68923 GCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGGTTTCTGGATCGTCAA 68982 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||||| |||||||| | ||||| | ||||||| || | ||||| ||| ||| Sbjct 68983 GAACTACCGCGAGTCGTACGATATGTACGCATGCAACGGTATCTTGTTCAACCAC--GAG 69040 Query 72596 TCCCAAC--AGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 72653 |||| | | || | ||||| || | || ||| || | ||||| | | | Sbjct 69041 TCCCCGCGTCGTGGTCGCACCTTCGTCACGAGGAAGATCTCGCGAGCTGTCGCCGAGA-T 69099 Query 72654 TTCAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 72711 || | | ||| | | | ||| | || ||||| || || || ||||| | ||||||| Sbjct 69100 CTCGCTCG-GTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGG 69158 Query 72712 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 72771 || | ||| || ||||| || | |||||| |||||||||| ||||| || || || | Sbjct 69159 GACACGCGCGCGACTACGTCGAGGGCATGTGGATGATGCTGCAGCAAGACACCCCCGACG 69218 Query 72772 ACTATGT 72778 ||| ||| Sbjct 69219 ACTTTGT 69225 >seq74 Length=1285146 Score = 111 bits (122), Expect = 4e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | || || |||||||| || ||||| ||| Sbjct 284727 CCACCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCG 284668 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| ||||| || || ||| Sbjct 284667 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGG 284608 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || | || ||||| || || | ||| ||| || || Sbjct 284607 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 284548 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct 284547 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 284502 >seq82 Length=918051 Score = 86.0 bits (94), Expect = 1e-11 Identities = 213/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| || || | || |||||||| || || || || | |||||| | || | || Sbjct 275532 CCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACGAC 275473 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || || ||||| || ||||| || || ||||||||||| | |||||| || Sbjct 275472 CCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTCAA 275413 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||||| |||||||| ||||||| | |||||| ||| ||||| |||||| Sbjct 275412 GAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATTCTCTTCAACCACGAGTC 275353 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | | |||| ||||| || | || ||| || | ||||| | | ||| Sbjct 275352 CCCCCGCCGTGGCCGCACCTTCGTCACGAGAAAGATCTCGCGCGCCGTCGCCGAGA-TTT 275294 Query 72656 CAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 | | | ||| | | | ||| | || |||||||| | || ||||| | ||||||||| Sbjct 275293 CGCTCG-GTCAACAGGATTGCCTTTACCTCGGTAACTTGGAGGCCAAGCGTGATTGGGGA 275235 Query 72714 TATGCGAAGGATTACGTAGA 72733 | || |||||||| || Sbjct 275234 CACGCCCGCGATTACGTTGA 275215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652420023818