Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq70 114 1e-20 seq85 105 7e-18 seq74 95.1 1e-14 seq82 91.5 1e-13 >seq70 Length=1260279 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||| | || || || | | |||||||| ||||||||||||||| Sbjct 438180 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAG 438239 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | || || || | | |||| |||||||||||||| || || Sbjct 438240 AGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGA 438299 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || || || | ||| || | ||||| | |||||| | Sbjct 438300 ATGCCCTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGA 438357 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 438358 CCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 438406 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||||| || || || | | || ||||| ||||||||||||||| Sbjct 679623 CCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 679682 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||| | |||| | ||||| ||||| ||||| Sbjct 679683 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 679742 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | ||||| || Sbjct 679743 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATCGTGTCTGAGGACTCGAC 679801 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | ||| || || ||||| || || || ||||| ||||| Sbjct 679802 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| ||||||||||| ||| Sbjct 437952 CCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAG 438011 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| | ||||||||||| || || Sbjct 438012 AGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGA 438071 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || || || | ||| || | ||||| | |||||| | Sbjct 438072 ATGCCCTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGA 438129 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || ||||| || || || ||||| ||||| Sbjct 438130 CCTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 438178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||| | || || || | | || ||||| ||||||||||||||| Sbjct 679851 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 679910 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||| | |||| | ||||| ||||| || || Sbjct 679911 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 679970 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | ||||| || Sbjct 679971 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATCGTGTCTGAGGACTCGAC 680029 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | ||| || || ||||| || || || ||||| ||||| Sbjct 680030 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 680077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||| | || || || | | || ||||| ||||||||||||||| Sbjct 680079 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 680138 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||| | |||| | ||||| ||||| || || Sbjct 680139 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 680198 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | ||||| ||| Sbjct 680199 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 680258 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || |||| ||| || || ||||| ||||| Sbjct 680259 TCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCAT 680305 >seq85 Length=620530 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | || || || | | | ||||||||||| ||||||||||| Sbjct 151200 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCG 151141 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 151140 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 151081 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| | Sbjct 151080 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 151023 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | ||| || || || ||||| || || || || ||| ||| Sbjct 151022 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGCCTGG 150972 >seq74 Length=1285146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||| || |||||||| || || |||| | Sbjct 284694 GACTCCTTTTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 284635 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| || ||||| || || || ||||| ||||| || | || || || | Sbjct 284634 AAGATGAGACGTTGCTGGTCGGGGGGGATGCCTTCCTTGTC-TTGGATCTTGGTCTTGAC 284576 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| |||||| ||||||| || | || || || || || || | Sbjct 284575 GTTG-TCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCT 284517 Query 138599 TTACAAAAATCTGCA 138613 | || || || |||| Sbjct 284516 TGACGAAGATTTGCA 284502 >seq82 Length=918051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAA 52756 |||||||||||||| || || || ||||||| | || ||||| || ||| || || Sbjct 77031 TACATCGAGTTTGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 76973 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 ||| || || || || |||||||| | |||||||| ||||||||||| |||||||| Sbjct 76972 CGCCGAGAACCCTTTCGACTTTATGAATATGATTTCGCTCGAGGGCAAGACAAACTTTTT 76913 Query 52817 CGAGAAGCGAGT 52828 |||||||| || Sbjct 76912 TGAGAAGCGTGT 76901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261587370320