Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12-
23] 131 sequences; 28,837,994 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq70 158 1e-33
seq82 100 3e-16
>seq70
Length=1260279
Score = 158 bits (174), Expect = 1e-33
Identities = 176/234 (75%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| ||| || || | |||| |||||| || | ||| || || || ||||| |||||
Sbjct 679617 TACTG-TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTA 679675
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
||| | ||||||| || || ||||| || |||||| |||||||||||||||| ||
Sbjct 679676 GTCGGAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTC 679735
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
|||||| ||||||||||||||| ||| || ||||| | |||| ||||| |
Sbjct 679736 GGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGA 679795
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| |||| || | ||| ||||||||||| || || || ||||| |||||
Sbjct 679796 CTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849
Score = 149 bits (164), Expect = 6e-31
Identities = 161/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| || || || ||||| ||||| ||| | ||||||| || ||
Sbjct 680096 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 680155
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| |||||||||||||||| ||||| || |||||||||||||||
Sbjct 680156 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 680215
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
||| || ||||| |||| |||| ||||||| |||||| |||| || | ||| |
Sbjct 680216 GATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 680274
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| |||| ||| || || ||||| |||||
Sbjct 680275 TGCCTGTCAAAGTCTTGACGAAAATTTGCAT 680305
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||||||| | ||| ||||| || ||||| |||||||||
Sbjct 437952 CCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAG 438011
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||||| || || ||||| || |||||| ||||||||||||| || || || ||
Sbjct 438012 AGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGA 438071
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || || ||||| |||| |||| ||||| | ||||||
Sbjct 438072 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGAC 438130
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | ||| ||||||||||| || || || ||||| |||||
Sbjct 438131 CTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 438178
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| || || || ||||| ||||| ||| | ||||||| || ||
Sbjct 679868 CACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 679927
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || |||||| |||||||||||||||| ||||| || |||||||||||||||
Sbjct 679928 GAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 679987
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||||| | |||| ||||| | |||||| |||| || | ||| ||
Sbjct 679988 GATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATCGTCTT 680047
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||||||| || || || ||||| |||||
Sbjct 680048 GCCGGTCAGCGTCTTGACGAAAATTTGCAT 680077
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | ||| ||||| || || || |||||||| |
Sbjct 438408 CCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 438467
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || |||||| |||||||||||||||| || || ||
Sbjct 438468 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 438527
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || || ||||| |||| |||| ||||| | ||||||
Sbjct 438528 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCGATCGTGTCTGATGACTCGAC 438586
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||| ||||| || || ||||| || || || |||||
Sbjct 438587 CTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 438634
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | ||| ||||| || ||||| ||||| ||| | ||||||| || ||
Sbjct 438197 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGACCGTCCTC 438256
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
| ||| || || || |||| | ||||| || || || || ||||||||||||||
Sbjct 438257 CAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 438316
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
|| || ||||| |||| |||| ||||| | |||||| |||| || | ||| |
Sbjct 438317 AATCTTGGTCTTGACGTTG-TCGATCGTGTCTGACGACTCGACCTCGAGCGTGATCGTCT 438375
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || || || || ||||| || |||||
Sbjct 438376 TGCCAGTGAGCGTCTTGACAAAGATTTGCAT 438406
>seq82
Length=918051
Score = 100 bits (110), Expect = 3e-16
Identities = 103/132 (78%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497
|||||||| |||||||||||||| || | || | || | | ||| ||| | | |
Sbjct 77031 TACATCGAGTTTGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 76973
Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557
| ||||||| || ||||| |||||||| | |||||||||||||||||||| ||||||||
Sbjct 76972 CGCCGAGAACCCTTTCGACTTTATGAATATGATTTCGCTCGAGGGCAAGACAAACTTTTT 76913
Query 47558 CGAGAAGCGCGT 47569
|||||||| ||
Sbjct 76912 TGAGAAGCGTGT 76901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500021367440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |