Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq79 181 1e-40 seq74 136 5e-27 >seq79 Length=1733205 Score = 181 bits (200), Expect = 1e-40 Identities = 554/850 (65%), Gaps = 15/850 (2%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || || || | | ||| ||| | | |||||| || ||||| Sbjct 51219 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 51160 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || | || || ||| || ||||| | ||||||||| || || ||| |||| Sbjct 51159 GTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCA 51100 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| | || | || || || |||| | |||||| || | | Sbjct 51099 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCATAC 51040 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 51039 CAAAGCTTTTGCG-CGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 50981 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 | | | ||||||||| || | || ||| || || || | | || ||||| Sbjct 50980 CAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 50921 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 ||| | ||| | || | |||| || |||| ||||||||| || || |||||||| || Sbjct 50920 GAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAGC 50861 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||||||||| ||| ||| |||| || | || || || || | |||| || Sbjct 50860 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 50801 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG--- 116906 || | || || ||||||||||| || ||||| | ||||| | || | |||| Sbjct 50800 CTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 50744 Query 116907 ---ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 ||| | |||| || || | ||| || ||| | || || ||||| || | ||| Sbjct 50743 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGAT 50684 Query 116964 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || | |||||| || || ||| || ||| | | | || | || | |||| Sbjct 50683 GCCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTGG 50626 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 ||| || ||| ||||| || || ||| ||||| | |||||| | |||| || || Sbjct 50625 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCG 50566 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || || ||||| || |||| | | || ||||| ||| ||| | || || Sbjct 50565 TAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGG 50506 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 117201 || || || ||||||||||| || || | |||||| |||| | | |||||| Sbjct 50505 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATG 50446 Query 117202 TTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGC 117261 | ||| | || |||||| ||||| | ||||| || |||| | ||| ||| Sbjct 50445 AAGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGC 50386 Query 117262 ATAAACATGT 117271 || | ||||| Sbjct 50385 ATGAGCATGT 50376 >seq74 Length=1285146 Score = 136 bits (150), Expect = 5e-27 Identities = 341/506 (67%), Gaps = 23/506 (5%) Strand=Plus/Plus Query 176546 CCCTTGGAAGCCTTGATGATTGGTGTCACCA--TTGAGACCACAAACCC--CAACTTGAG 176601 ||||||| ||||||| ||| || || | | | ||| | | || ||| || |||||| Sbjct 1090628 CCCTTGGTTGCCTTGACGATGGGGGTGATGAACTCGAG-CAAGAAGCCCTTCAGCTTGAG 1090686 Query 176602 GAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 176661 | || || | |||| | || | |||| ||| |||||||||||||| || ||||| Sbjct 1090687 CAACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATC 1090746 Query 176662 GTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATA 176721 || |||| ||| | ||| ||||||||| || || || ||| | || || || Sbjct 1090747 GTGATCCTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCAGTGTA 1090806 Query 176722 ATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT 176781 | ||||| || || |||||||| |||| ||||| | ||||| ||| || | ||| Sbjct 1090807 GACTTTACCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGT 1090862 Query 176782 -GAGTTGCGCCA---CTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACA 176837 ||| | ||| | | || || || || || |||| || || | ||||| | Sbjct 1090863 CGAGGAGGGCCTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGGAAGA 1090922 Query 176838 CACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAAT 176897 |||| |||| || ||||| || |||| ||||| | || ||||| | ||| ||||||| Sbjct 1090923 CACCATAGTTGTCTCGACCGACGACAGCCAGACCCGACACGGCGAGCGCCTTGGCGGAAT 1090982 Query 176898 CACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTGTTCGC 176955 | || || |||| ||||||||| ||||| || | | | ||| || || | |||||| Sbjct 1090983 CTCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTGGTTCGC 1091040 Query 176956 ATCGTCCAACTTGGGAATACCAGTAATTTTGGA---CTTACGAGCACCATCTGTCTTCTT 177012 ||| || | |||| || ||| || || || |||| | || || |||||||| Sbjct 1091041 ATCCTCGAGCTTGACAAGACCCGTGATACGCGATCGCTTATGT---CCGTCCGTCTTCTT 1091097 Query 177013 GAGTTCCTTCATCTCCTTGAACTTGG 177038 ||| || || ||||||||||| Sbjct 1091098 GAGCATCTGGTCCTGCTTGAACTTGG 1091123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506195381960