Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq79 241 2e-57 seq84 116 5e-20 seq70 105 8e-17 seq48 89.7 6e-12 >seq79 Length=1733205 Score = 241 bits (266), Expect = 2e-57 Identities = 338/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 50733 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 50674 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||| || ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 50673 TAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 50614 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| ||||| |||||||||||||| || Sbjct 50613 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAGATGCCTTCA 50554 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| ||| ||||||| || || || || |||||| |||||||| | ||| ||| Sbjct 50553 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTCCG 50494 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || |||||| | || |||||| || ||| | Sbjct 50493 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAGTTGTACGAC 50434 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 50433 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 50390 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 50389 ACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 50331 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | ||| ||| |||||||||| || | ||||||||||||| Sbjct 50330 AGCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 50280 Score = 138 bits (152), Expect = 1e-26 Identities = 297/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || ||| || ||||| ||||| | |||| | |||| || |||||| Sbjct 51183 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTC 51124 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | | ||| | |||||||||| ||||||| | || |||||| ||| Sbjct 51123 TTTTGGTTCGATTTTTTGTTTGCAGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCG 51064 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| || ||| || || |||| | || ||||||| | || | || ||||| Sbjct 51063 ACCTGGGCTTCGAGAATCGCATACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 51005 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 ||||| ||| | |||||||| ||||| || Sbjct 51004 GCCCTCCTTTTCGTATTTCTCGAACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAG 50945 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 |||||| || |||| || || ||||| | ||||||||| ||| | | | || ||| Sbjct 50944 GCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCAT 50885 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||||| || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 50884 GAAGAGATCGGGAATCCAGAGAGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 50825 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 ||||||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 50824 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT 50765 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 50764 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 50735 Score = 109 bits (120), Expect = 7e-18 Identities = 171/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 |||||||||||| |||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 52341 CTGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCC 52282 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||| || || || ||| ||||| |||||||||||||| || | |||| Sbjct 52281 CGTCTTCAGTCCTCGCTTCCAACCGTAGAAGTGCATCGACGTGAGCTGCGCCATTGTCGG 52222 Query 1627101 G-TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 | ||| | ||| | ||||||||| || |||||| | ||| | || ||||| | Sbjct 52221 GCTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 52163 Query 1627160 CCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| || | | | | |||||| ||||||||| ||||||||||||| | Sbjct 52162 ACAGATCGATAATGGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 52103 Query 1627220 CG 1627221 || Sbjct 52102 CG 52101 >seq84 Length=2026012 Score = 116 bits (128), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421 ||||| || || | ||||||||||||||| || | | ||| ||||| |||| | Sbjct 1186170 GATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTGT---A 1186226 Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 || ||| || || ||||||||| ||||||| |||| ||||| ||||| |||||||| Sbjct 1186227 GTTCGCGAGCTTGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTT 1186286 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 | || | ||||| |||||| ||||| || |||||||| |||||||| | |||||| Sbjct 1186287 GAGGATCAGCATCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTT 1186346 Query 1254542 G 1254542 | Sbjct 1186347 G 1186347 Score = 116 bits (128), Expect = 5e-20 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 1254365 GATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGA 1254421 ||||| || || | ||||||||||||||| || | | ||| ||||| |||| | Sbjct 1234170 GATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTGT---A 1234114 Query 1254422 GTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1254481 || ||| || || ||||||||| ||||||| |||| ||||| ||||| |||||||| Sbjct 1234113 GTTCGCGAGCTTGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTT 1234054 Query 1254482 CATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1254541 | || | ||||| |||||| ||||| || |||||||| |||||||| | |||||| Sbjct 1234053 GAGGATCAGCATCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTT 1233994 Query 1254542 G 1254542 | Sbjct 1233993 G 1233993 Score = 109 bits (120), Expect = 7e-18 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGA 1254402 ||| ||| || || | | ||||| || || ||||||||||||||||| || | | Sbjct 1522163 TGGACAGCTCTCCAGGGAGGATCAATCGGACCGCGGTCTGGATCTCGCGCGACGAGATGG 1522222 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||| |||| ||| ||| || | ||||||||| ||||||| || | | Sbjct 1522223 TCGACTTGCGGTTGT---AGTTCGCGAGCTTGGACGCCTCGGTGACGATGCGTTCAAAGA 1522279 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGA-CATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||| ||||| |||||||| | || || ||||| |||||| ||||| ||| ||||||| Sbjct 1522280 TGTCATTGACGAACGAGTTGA-GAATGAGCATCGCCTTGTTCGAGATACCCGTGTCGGGG 1522338 Query 1254522 TGCACCTGCTTGAGCACCTTG 1254542 || || ||||| | ||| ||| Sbjct 1522339 TGGACTTGCTTCAACACTTTG 1522359 >seq70 Length=1260279 Score = 105 bits (116), Expect = 8e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 929457 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 929516 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 929517 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCGACCAAGGG 929575 Query 19172 ATTCGAGATTGG 19183 ||||||||||| Sbjct 929576 TTTCGAGATTGG 929587 >seq48 Length=317269 Score = 89.7 bits (98), Expect = 6e-12 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 869653 GATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTC-CTTCATGAACCGGC 869711 |||||| || || |||||| |||| |||| || || ||||| ||| | ||||| Sbjct 262868 GATCTGAAACCCATAAAAGCACCTCGCCTCGGCGGACTGCACCTCGCTTGA-GAACCTCT 262926 Query 869712 CGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGA 869771 || |||| ||||| ||| | || || ||||||||||| || || ||||| || Sbjct 262927 CGACCAGATTCTCATTCACAACCCCATCCGAAGCGGCGAAAAAGGCGAGCACGTGGGCGA 262986 Query 869772 TAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGCGCTGAGGT 869828 |||||| ||| ||||||| | ||||| ||||| | | |||| || ||||| Sbjct 262987 TAAAGTAGCGTTCGTCGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGT 263046 Query 869829 CCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 | | ||| ||||||| ||| | || || | ||| | ||||||||| |||| Sbjct 263047 CGATCTCTTCGGCGGACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCA 263098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128449526527