Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq79 192 9e-43 seq84 132 8e-25 seq82 114 2e-19 seq48 114 2e-19 seq70 95.1 2e-13 >seq79 Length=1733205 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 50733 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 50674 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||| || ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 50673 TAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 50614 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || || || ||||||||||| || Sbjct 50613 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAGATGCCTTCA 50554 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| ||| ||||||| | ||| || || |||||| |||||| | | ||| ||| Sbjct 50553 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTCCG 50494 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 50493 GCGTTGAAGAGCGTCGGCG 50475 Score = 149 bits (164), Expect = 1e-29 Identities = 301/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || || ||||| ||||| | |||| | | ||||| |||||| Sbjct 51183 GGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTCGACGACTTGATCGTGCCAAGGTTC 51124 Query 2071624 TGCTGGTT-GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTC 2071682 | ||||| | | | | ||| | |||||||||| |||||| | || || || || Sbjct 51123 TTTTGGTTCGATTTTTTGTTTG-CAGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 51065 Query 2071683 GATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG 2071742 || ||| || || || || |||||| | ||||||| | || || | ||||| Sbjct 51064 GACCTGGGCTTCGAGAATCGCATACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCG 51005 Query 2071743 GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAG 2071802 ||||| | | | || ||| | |||||| | ||||| || Sbjct 51004 GCCCTCCTTTTCGTATTTCTCGAACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAG 50945 Query 2071803 GCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCAT 2071862 |||||| || |||| ||||| ||||| | |||||||||| | | | | || || ||| Sbjct 50944 GCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCAT 50885 Query 2071863 AAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCC 2071922 || || ||| |||| || | | |||||||| || || ||| ||||||||||| Sbjct 50884 GAAGAGATCGGGAATCCAGAGAGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 50825 Query 2071923 GTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCA 2071982 ||||||||| ||||| || | |||| || |||||||||||||||||| |||||| Sbjct 50824 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT 50765 Query 2071983 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 50764 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 50735 Score = 107 bits (118), Expect = 3e-17 Identities = 175/245 (71%), Gaps = 14/245 (6%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | || ||||||| ||||||||||| Sbjct 52340 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 52281 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 52280 GTCTTCAGTCCTCGCTTCCAACCGTAGAAGTGCATCGACGTGA--GCTGCGCCATTGTCG 52223 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||| | ||| | |||||||| Sbjct 52222 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCG 52164 Query 2069428 GCCATGTCG---ATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483 | || ||| ||||| | ||| || | |||||| ||||||||| | | |||||| Sbjct 52163 GACAGATCGATAATGGT----CTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTT 52108 Query 2069484 GAGAT 2069488 ||||| Sbjct 52107 GAGAT 52103 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 51484 CGCGGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGCGCCTCGGGTGAAT 51426 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 51425 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 51368 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || ||||||| ||||| ||| || Sbjct 51367 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGGTAGTAGTTGACGTCAAT 51308 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 51307 GATGCGGTTCAAGTTG 51292 >seq84 Length=2026012 Score = 132 bits (146), Expect = 8e-25 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 1485482 CGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCA 1485541 || |||| || ||||| |||| |||||| ||| || || || | | ||||| || | Sbjct 1186121 CGACCTTTGTGCCCTCCGAGATGGCGTGTTTGGATAGCTCTCCAGGGAGGATCAATCGGA 1186180 Query 1485542 CGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGC 1485598 | | ||||||||||||||| | | | ||| ||||| ||| |||| |||| || Sbjct 1186181 CCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTG-TAGTTCGCG--AGCT 1186237 Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 || ||||||||| ||||||| |||| ||||| ||||| |||||||| | |||| || Sbjct 1186238 TGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTTGAGGATCAGCA 1186297 Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||| ||||| || |||||||| |||||||| | ||||||| Sbjct 1186298 TCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTTG 1186347 Score = 132 bits (146), Expect = 8e-25 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1485482 CGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCA 1485541 || |||| || ||||| |||| |||||| ||| || || || | | ||||| || | Sbjct 1234219 CGACCTTTGTGCCCTCCGAGATGGCGTGTTTGGATAGCTCTCCAGGGAGGATCAATCGGA 1234160 Query 1485542 CGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGC 1485598 | | ||||||||||||||| | | | ||| ||||| ||| |||| |||| || Sbjct 1234159 CCGAGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGCGGTTG-TAGTTCGCG--AGCT 1234103 Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 || ||||||||| ||||||| |||| ||||| ||||| |||||||| | |||| || Sbjct 1234102 TGCACGCCTCGGTGGCGATGCGCTCGAAGATGTCATTGACGAACGAGTTGAGGATCAGCA 1234043 Query 1485659 TCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||| ||||| || |||||||| |||||||| | ||||||| Sbjct 1234042 TCGCCTTGTTCGAGATACCGGTATCGGGGTGGACCTGCTTCAACACCTTG 1233993 Score = 118 bits (130), Expect = 2e-20 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| |||||| ||| ||| || || | | ||||| || || | Sbjct 1522136 CCTTTGTGCCTTCCGAGATGGCGTGTTTGGACAGCTCTCCAGGGAGGATCAATCGGACCG 1522195 Query 1485545 CGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||||||||||||| | | | ||| ||||| ||| |||| |||| || | Sbjct 1522196 CGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTG-TAGTTCGCG--AGCTTGG 1522252 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| || | ||||| ||||| |||||||| | || ||||| Sbjct 1522253 ACGCCTCGGTGACGATGCGTTCAAAGATGTCATTGACGAACGAGTTGAGAATGAGCATCG 1522312 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || ||||| | ||| ||| Sbjct 1522313 CCTTGTTCGAGATACCCGTGTCGGGGTGGACTTGCTTCAACACTTTG 1522359 >seq82 Length=918051 Score = 114 bits (126), Expect = 2e-19 Identities = 152/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 || |||| ||||||| | ||| ||||||| ||| || || ||| ||||||| Sbjct 77873 AAGCACCGAGCCTCGGCGGACT-GGACCTCACCGGAGAATCGCTCGACCAAGTTCTCATT 77931 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 |||||||||||| |||||||||||||||||||||||| ||| |||| |||||||| Sbjct 77932 GACGATGCCGTCGGACGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTC 77991 Query 796260 GTCGCTGAG---CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGT 796316 | |||| | |||||| | | |||| | | ||| | ||| |||||||| Sbjct 77992 GGGCTTGAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGT 78051 Query 796317 CCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 |||||| || ||||||||||| |||||| Sbjct 78052 CCAAAACGATGCCTCGGCCTTCTTGTAC 78079 >seq48 Length=317269 Score = 114 bits (126), Expect = 2e-19 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGG-GTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCA 796197 ||| ||||| ||||||| | ||| | ||||| ||| | ||| | || |||| |||||| Sbjct 262883 AAAGCACCTCGCCTCGGCGGACT-GCACCTCGCTTGA-GAACCTCTCGACCAGATTCTCA 262940 Query 796198 GCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCG 796257 ||| | || || ||||||||||||||||| ||||| |||||||| || ||| Sbjct 262941 TTCACAACCCCATCCGAAGCGGCGAAAAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCG 263000 Query 796258 TCGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCG 796314 |||| | ||||| | ||||| | |||| ||||||||||| ||| |||||| Sbjct 263001 TCGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGTCGATCTCTTCGGCG 263060 Query 796315 GTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 | ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 263061 GACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAGATC 263102 >seq70 Length=1260279 Score = 95.1 bits (104), Expect = 2e-13 Identities = 199/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | |||| ||||| || || || | || Sbjct 845691 GACGTCGTACGCAACCGCATCAAGGCTTTCGCTCAGAAAAAGGTCACACTCCCATCGGGT 845632 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | |||||||||| || ||||||| | || ||| ||||| || || Sbjct 845631 CGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAACAAGCG 845572 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 |||||| ||| ||||||| | | ||||||| || || || || | || |||||| | Sbjct 845571 CTCCGAAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACCAG 845512 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | ||| Sbjct 845511 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTC 845452 Query 2019387 ACCGACGCCCAGATCGCCG-CGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 || || ||| || | || | |||| ||| |||||| ||| |||||||| Sbjct 845451 ACTGATGCCGAG-TTGCTGAGGCGTTTGCTGGAGATTTGCGAGATTGAAAAGGT 845399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916232464932509