Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq70 134 3e-26 seq85 95.1 2e-14 >seq70 Length=1260279 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | |||||| || |||||||| || ||||| ||||| || || || || || Sbjct 679623 CCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 679682 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || ||||| ||||| | || || || || ||||| Sbjct 679683 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 679742 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || ||||| || ||||| || | ||| || || Sbjct 679743 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTC-TGAGGACTCGAC 679801 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| |||| |||||| || || || ||||| Sbjct 679802 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || |||||||| || ||||| ||||| || || || || | Sbjct 679849 TACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGG 679908 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || || || || ||||| ||||| | || || || || || | Sbjct 679909 AGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGG 679968 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| || || ||||| || ||||| || | ||| || Sbjct 679969 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTC-TGAGGACTCG 680027 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || ||||||||||| |||| |||||| || || || ||||| Sbjct 680028 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 680077 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || |||||||| || || || ||||| || || || || | Sbjct 438178 TACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 438237 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || | || || || |||||||| || | ||||| ||||| | Sbjct 438238 AGAGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGG 438297 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || || || || ||||| || | || | Sbjct 438298 GAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGA 438357 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | |||||| ||||| || ||||| Sbjct 438358 CCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 438406 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||| || || |||||||| || ||||| ||||| || || || || | Sbjct 680077 TACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGG 680136 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||| || || || || ||||| ||||| | || || || || || | Sbjct 680137 AGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGG 680196 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | || | Sbjct 680197 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 680256 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||||||||| ||||| || || || ||||| Sbjct 680257 CCTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCAT 680305 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || || || || || ||||| || || ||||| || || | | ||| Sbjct 437963 ACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACC 438022 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||| ||||| | || ||||| ||||| || || || ||||| Sbjct 438023 GTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTT 438082 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| | || || || || ||||| || | || || || | || || Sbjct 438083 GTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGACCTCGAGCGTAAT 438142 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| |||||| || || || ||||| Sbjct 438143 CGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 438178 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || |||||||| || || || ||||| || || ||||| | Sbjct 438406 TACCACCACGGAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCG 438465 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| | || || || ||||| | Sbjct 438466 CGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGG 438525 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || || || || ||||| || | || | Sbjct 438526 GAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGA 438585 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| || | ||| || || || || ||||| Sbjct 438586 CCTCGAGGGTGATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 438634 >seq85 Length=620530 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | || || || ||||| || || || || || || || || || || | Sbjct 151202 TACCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 151143 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || || |||||||| || | ||| || ||||| | Sbjct 151142 CGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCG 151083 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || || || || ||||| || | || | Sbjct 151082 GGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGA 151023 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 | || | || ||||||||||| || | ||||| || || || ||| Sbjct 151022 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGC 150976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825552064409