Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12- 23] 131 sequences; 28,837,994 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq70 111 1e-19 >seq70 Length=1260279 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| || || |||||| |||||||| ||||| || Sbjct 437952 CCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCGGAG 438011 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || || ||||||||||| || || Sbjct 438012 AGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGA 438071 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || ||| | || |||||| ||| || Sbjct 438072 ATGCCCTCCTTGTCT-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGAC 438130 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || ||||| | ||| || || ||||| ||||| Sbjct 438131 CTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 438178 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||||| | |||||| || || || |||||| |||||||| || || || Sbjct 438180 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAG 438239 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | || || || ||||| || | |||||||||||| || || Sbjct 438240 AGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGA 438299 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || ||| | || |||||| ||| || Sbjct 438300 ATGCCCTCCTTGTCT-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGAC 438358 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || || || | ||| || ||||| || ||||| Sbjct 438359 CTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 438406 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||||||| |||||| || || || ||||| |||||||| || || || Sbjct 679623 CCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 679682 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || ||||| || || || || ||||| ||||| || || Sbjct 679683 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGGA 679742 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | || |||||| | ||| || Sbjct 679743 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGAC 679801 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || ||||| | ||| || || ||||| ||||| Sbjct 679802 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 679849 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||||| | |||||| || || || ||||| |||||||| || || || Sbjct 679851 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 679910 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || ||||| || || || || ||||| ||||| || || Sbjct 679911 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 679970 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | || |||||| | ||| || Sbjct 679971 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGAC 680029 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || ||||| | ||| || || ||||| ||||| Sbjct 680030 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 680077 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||||| | |||||| || || || ||||| |||||||| || || || Sbjct 680079 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 680138 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || ||||| || || || || ||||| ||||| || || Sbjct 680139 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 680198 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| | ||| || Sbjct 680199 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 680257 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || || || || || || || ||||| ||||| Sbjct 680258 CTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCAT 680305 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || |||||| || ||||| ||||| | || || || Sbjct 438417 AGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGG 438476 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || || ||||| ||||| || || | |||||| Sbjct 438477 CCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCC 438536 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | || |||||| ||| || || | ||| Sbjct 438537 TTGTCT-TGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGT 438595 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | |||||| || || || ||||| Sbjct 438596 GATCGTCTTGCCAGTGAGCGTTTTAACGAAGATTTGCAT 438634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729097514523