Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014965.1_202016-12-
23] 131 sequences; 28,837,994 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq70 102 6e-17
seq85 98.7 7e-16
seq74 96.9 2e-15
>seq70
Length=1260279
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||||||||| ||||| || || |||||||| ||||| || || || |
Sbjct 438634 ATGCAAATCTTCGTTAAAACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGTCATCA 438575
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || | || || || | || ||||| || || | || ||||| ||
Sbjct 438574 GACACGATCGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 438516
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || || ||||| || || || |||| ||||| | | ||||||||
Sbjct 438515 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGATTACAA 438456
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 438455 CATCCAGAAGGAGTCGAC 438438
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || || || || || ||||| || ||||| || || || |
Sbjct 438178 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 438119
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || || | || || || | || ||||| || || | || ||||| ||
Sbjct 438118 GACACGATCGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 438060
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || || ||||| || || || |||| ||||| | |||||||||
Sbjct 438059 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 438000
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || || ||||| || | ||||| ||
Sbjct 437999 CATTCAGAAGGAGTCGACGCTTCATTTGGT 437970
>seq85
Length=620530
Score = 98.7 bits (108), Expect = 7e-16
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672
||| || ||||| || || || ||||| || |||||||| ||||| || || || | ||
Sbjct 150976 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 151035
Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731
||| | || || | || || || | | ||||| ||||| | |||||||| || |
Sbjct 151036 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 151094
Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791
| ||| | || ||||||||||| || || || || | |||||| | | || |||||||
Sbjct 151095 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACA 151154
Query 23792 TACAAAAAGAGTCCAC 23807
| ||||| ||||| ||
Sbjct 151155 TCCAAAAGGAGTCGAC 151170
>seq74
Length=1285146
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671
|||| || ||||| || ||||||||||| || || ||||| ||||| || || || | |
Sbjct 284502 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 284561
Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||| | || || | || || || | | ||||| ||||| | || || || ||
Sbjct 284562 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCCGACCAG 284620
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||||||||| || || || || | |||||| | | || ||||||
Sbjct 284621 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 284680
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 284681 ATCCAAAAGGAGTCGAC 284697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009060346548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |