Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12- 23] 147 sequences; 25,410,563 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq101 147 2e-30 >seq101 Length=1647458 Score = 147 bits (162), Expect = 2e-30 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||| || || | | ||| | |||||| ||||| || |||||| || |||||||| | Sbjct 690258 ATTGACCACCACGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATATTGTAGT 690199 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || || || || | || || |||||||| |||||||| || | |||||||||||| | Sbjct 690198 CGGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTG 690139 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGA 43129 || | || |||||||||| ||| | || | |||| ||| | | | |||||| ||| Sbjct 690138 GAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGA 690081 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||| |||||| |||||||| || || ||||| |||||||||||||| Sbjct 690080 CTCGACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 690027 Score = 136 bits (150), Expect = 5e-27 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 463020 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 462961 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 462960 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCCTCCTT 462901 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 462900 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTG 462843 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| |||||||||||||| Sbjct 462842 ATCGTTTTACCGGTCAGGGTCTTGACAAAGATTTGCAT 462805 Score = 136 bits (150), Expect = 5e-27 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 463704 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 463645 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 463644 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCCTCCTT 463585 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 463584 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTG 463527 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| |||||||||||||| Sbjct 463526 ATCGTTTTACCGGTCAGGGTCTTGACAAAGATTTGCAT 463489 Score = 136 bits (150), Expect = 5e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 690014 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 689955 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 689954 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTT 689895 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | |||||| ||| || || |||| ||||| Sbjct 689894 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGA 689836 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || || ||||| || ||||||||||| Sbjct 689835 TCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 689799 Score = 132 bits (146), Expect = 6e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 462792 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 462733 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 462732 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCCTCCTT 462673 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | |||||| ||| || || |||| ||||| Sbjct 462672 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGA 462614 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || || ||||| || ||||||||||| Sbjct 462613 TCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 462577 Score = 132 bits (146), Expect = 6e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 463248 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 463189 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 463188 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCCTCCTT 463129 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | |||||| ||| || || |||| ||||| Sbjct 463128 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGA 463070 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || || ||||| || ||||||||||| Sbjct 463069 TCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 463033 Score = 132 bits (146), Expect = 6e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 463476 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTACGGCC 463417 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 463416 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCCTCCTT 463357 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | |||||| ||| || || |||| ||||| Sbjct 463356 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCGAGCGTGA 463298 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||||||| || || ||||| || ||||||||||| Sbjct 463297 TCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 463261 Score = 132 bits (146), Expect = 6e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| ||||| || |||||| || || ||||| || || || || || | Sbjct 689786 ACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 689727 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || | |||||||||||| | || | || |||||| Sbjct 689726 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATGCCCTCCTT 689667 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | |||||| ||| || || |||| ||||| Sbjct 689666 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGA 689608 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| || ||||||||||| Sbjct 689607 TCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 689571 Score = 125 bits (138), Expect = 8e-24 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || ||||| || | | ||| | |||||| || | || |||||| || || || || Sbjct 463949 TACTGTCCGCCACGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTATAG 463890 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || || | || || |||||||| |||||||| || | |||||||||||| Sbjct 463889 TCGGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCT 463830 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | || |||||||||| ||| | || | |||| ||| | | | |||||| || Sbjct 463829 GGGGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACG 463772 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || |||| |||||| |||||||| || || ||||| || ||||||||||| Sbjct 463771 ACTCAACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 463717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816549285160