Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12- 23] 147 sequences; 25,410,563 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq109 250 2e-61 seq63 114 1e-20 seq101 113 4e-20 seq55 95.1 1e-14 >seq109 Length=1214152 Score = 250 bits (276), Expect = 2e-61 Identities = 905/1402 (65%), Gaps = 60/1402 (4%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| |||| ||| || || |||||| ||||| ||||||||| Sbjct 12993 GAAGTGTAAGGCTCGAAGCATTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 12934 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 |||||||| ||| |||||||| | || |||||||| | ||| || ||||||| Sbjct 12933 ATCGGCGCACACACGAGCGAGTTGCGCAGACCGTGCTTGGCAATCTTCTCCTTGAGCTCG 12874 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC- 22680 |||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 12873 GACCAGTCCCACAGATCGCTCGGGGTCACAC---CCCACAGGTCGTACTGCAACTCGCCC 12817 Query 22681 -GCGACTCGCCGGGCTGCCTTCGTA---CGTTTCGTA--CGGA----CCATATATCGCG- 22729 |||| ||||| || ||| ||| | ||| ||| ||| | ||| Sbjct 12816 TGCGAG--GCCGGCGATCCGGGGTAAGTCGTGTAGTAGCCGGGGTCGCCAGGGTTGGCGA 12759 Query 22730 --GCAAGTTCGCA-GC----TCGC-------CTCCAACGCGCCGTAATATATAGTCTCGA 22775 |||| |||| || |||| ||| | |||| ||| || || ||||||| Sbjct 12758 TGGCAAAGTCGCGCGCCATGTCGCACGAAGACTCGATCGCGGCGTGGTAGATGGTCTCGA 12699 Query 22776 AGATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATC 22831 |||| | |||||| | | | ||| | ||||| ||| ||||||| || | Sbjct 12698 AGATCTGCTTGTTGAGCTTGCGCGCCTCAGGCGAA----TCGAACGGCATCGCCAAGGCC 12643 Query 22832 ACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGAC 22891 | |||||| || || | ||| || || || || ||||| || |||| | || || Sbjct 12642 ATGAACGCATCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAA 12583 Query 22892 ACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTC 22951 || |||||| | || || | || ||||| | | ||||||||| | Sbjct 12582 TTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTAAACGCA 12523 Query 22952 ACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAAC 23011 || | || | | |||||||| ||||| || | | || | Sbjct 12522 ACGACCTTGACGACCTCGTGCAGCTTTTTGAAGTCGTACACGCCG--TTCTTGATGAAGC 12465 Query 23012 TTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCT 23071 | | ||| ||||||| || | ||||| || || |||||| | || |||||| Sbjct 12464 TCGGCAACG-CGATCGAAGCCAAGTTGCAGACAGCGCACTCGTCGGGAGCCGAGTACTCG 12406 Query 23072 ACAATTTCGGTACATAGATTGCTACACTTT-ATCGTGCCCAAATTGCTCTGGTT-GCTTT 23129 | || ||||| || || || | || ||| |||||||| | || | ||||| | || Sbjct 12405 ATGATCTCGGTGCACAGGTT-CGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCGACTT 12347 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189 || | | || | ||||||||||||||| | || |||| ||||||||||| | ||||| Sbjct 12346 TTTGTTCGCG-GCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCTCGA 12288 Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACA-----CGTCGCACGTACCTGCCTTCTTC 23244 |||||| ||| | | || ||| | | | | || || ||| | || Sbjct 12287 GGATCGCGTACCAAAGCTTTTGCGCGGGGATGGTCTTCTTGGCGCGACCCTCCTTT---- 12232 Query 23245 CTCGTACTTTTGGTACA--ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302 |||||||| | | ||| ||||| || || | ||||| ||| |||||||| Sbjct 12231 -TCGTACTTCTCGAACAGGACGCGG--AACTCTTCGCCGTAGACTTCGTGGAGGCCGGGG 12175 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | | || || | ||| |||| | | || || || ||| || ||| Sbjct 12174 GCCTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGA 12115 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || ||||| || || |||| || || || ||||| || || || |||||| ||| Sbjct 12114 TCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTC 12055 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || | |||| || || || ||||| || ||||||||||||||||| | || || Sbjct 12054 TTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAG 11995 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || || | ||| ||||| || || |||||||| || || ||||||||||| || | Sbjct 11994 GCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGC 11935 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCT 23602 ||||| || |||| || || || |||| ||| || | || || | || Sbjct 11934 AGCATGGGGACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCG 11875 Query 23603 CGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGT 23662 || | |||||| | | ||||| || || ||| | | || || || | |||||| Sbjct 11874 CGGATGTTGTGGATGCTTAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTC 11815 Query 23663 TTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAA 23722 || || |||||||||||||| || || ||| || || ||| ||||||||| ||||| Sbjct 11814 TTGAGCGTGTCGTAGATGCCTTCAATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGAC 11755 Query 23723 GACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTAT 23782 || | |||| | || ||| |||| ||| || ||||| |||||| || ||||| Sbjct 11754 GAGAGCTGCGGGTGAGGGGTACCGGCATTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAG 11695 Query 23783 CCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCG 23842 | | ||||| || ||||| | | | | || || ||||| | ||||| || ||| Sbjct 11694 CGCTCGGACATGAGGTTGTAGGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCG 11635 Query 23843 ATGGCGACGCGCATCATCATGT 23864 | |||||| ||||| | ||||| Sbjct 11634 ACGGCGACACGCATGAGCATGT 11613 >seq63 Length=908128 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| ||||| |||||||| || ||||| ||||||||| |||| || || | Sbjct 127546 AATCAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 127605 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||||||| |||| | ||||| | || |||||||||||| | ||||| || Sbjct 127606 GTCCGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCAGA 127665 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| ||||| || ||||| ||||| ||| | || || ||| | || || Sbjct 127666 CCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTA 127725 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || ||||| || || |||| || Sbjct 127726 CAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 127761 >seq101 Length=1647458 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| |||| Sbjct 463717 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCG 463776 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 463777 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 463836 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||||||||| ||| | || || || | ||| |||||| Sbjct 463837 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTATAAC 463896 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 463897 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 463928 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| |||| Sbjct 462577 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCG 462636 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 462637 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 462696 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 462697 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 462731 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| |||| Sbjct 463033 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCG 463092 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 463093 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 463152 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 463153 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 463187 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| |||||||||||||| |||| ||||| |||| Sbjct 463261 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCG 463320 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 463321 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 463380 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 463381 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 463415 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| |||||||||||||| |||| || || |||| Sbjct 689799 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTCGAGTCGTCG 689858 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 689859 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAG 689918 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 689919 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 689953 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 689571 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 689630 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 689631 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 689690 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 689691 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 689725 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| |||||||||||||| |||| || || |||| Sbjct 690027 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTCGAGTCGTCG 690086 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 690087 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 690146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 690147 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 690181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| || ||||||||||| |||| || || |||| Sbjct 462805 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAAACGATCACGCTCGAGGTCGAGTCGTCG 462864 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 462865 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 462924 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 462925 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 462959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| || ||||||||||| |||| || || |||| Sbjct 463489 ATGCAAATCTTTGTCAAGACCCTGACCGGTAAAACGATCACGCTCGAGGTCGAGTCGTCG 463548 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 463549 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 463608 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 463609 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 463643 >seq55 Length=1512399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| ||||| ||||| || || ||||| || |||||| |||| || || | |||| Sbjct 1270627 TGCAAATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCG 1270568 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| |||| | ||||| | || ||||||||||| | || || ||||||| Sbjct 1270567 ACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAGC 1270508 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACA 31373 | ||||| || ||||| ||||| ||| | || || ||| | || || |||| Sbjct 1270507 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCGGACTACAACA 1270448 Query 31374 TTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 | ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 1270447 TCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGCGGTGGTGCCAAGAAGCG 1270390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765580904240