Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12-
23] 147 sequences; 25,410,563 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq109 114 3e-20
seq55 107 4e-18
seq73 100 6e-16
>seq109
Length=1214152
Score = 114 bits (126), Expect = 3e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | || ||||| ||||| ||||| || || || ||||| || |||| ||||||
Sbjct 945238 GGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACGCTGATCAAGCTCTTGACGGGCGAG 945297
Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
||| | || || || || |||||| |||||| |||| | || ||||||||
Sbjct 945298 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCACCCCAACTTGCGTGTTGCGTACGTCGCC 945357
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349
|| ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| |||
Sbjct 945358 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAG 945417
Query 280350 TGGCGCTA 280357
||||| ||
Sbjct 945418 TGGCGTTA 945425
>seq55
Length=1512399
Score = 107 bits (118), Expect = 4e-18
Identities = 197/281 (70%), Gaps = 12/281 (4%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCA---CGCTGGCAACCGCTGGTCTT 217893
||||| |||||| |||| || ||||| || ||||| |||| || | |||||
Sbjct 469685 TGCACGCTCATCTTGACCGAAGGAGATTC---TGCCAAAGCGCTCGCCGTGTCCGGTCTG 469741
Query 217894 GCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTG 217953
||||| || ||||| || | |||||| |||| ||| | || || ||| |||||||||||
Sbjct 469742 GCCGTCGTCGGTCGAGACAACTATGGTGTCTTTCCCTTGCGAGGAAAGTTGCTCAACGTG 469801
Query 217954 CGCGATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAA 218011
|| || || ||| ||| || ||||| | ||||| |||||| || |||||||| |
Sbjct 469802 CGTGAAGCGGCGG--GCAAGGCCTTGCTCGACAATGCCGAGATTCAAGCGATCAAGCAGA 469859
Query 218012 TCCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCT 218070
|| ||||||| ||| || || ||||| || | || | || || ||||| |||
Sbjct 469860 TCTTGGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAG 469918
Query 218071 GTCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACAT 218111
||||| | ||| | ||| ||| || || ||||||||
Sbjct 469919 CTCATGATCATGGCCGATCAGGATCACGATGGATCCCACAT 469959
Score = 95.1 bits (104), Expect = 2e-14
Identities = 270/414 (65%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| ||||| |||||||| | || || |||||| | || | |||||| || ||
Sbjct 470369 GATTTCATTAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGTTCGATCCCT 470428
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
||| | ||||| | || || || || ||| || | || | ||||||||
Sbjct 470429 TCCGTCATTGATGGTTTTAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 470488
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|| || || || || ||||||| || || |||||||| |||| || |
Sbjct 470489 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGCGGTTATGTCGCCGAGCACTCGGCG 470548
Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757
||||||||||| || |||| |||| ||| |||| | ||| ||||||| | | ||
Sbjct 470549 TACCATCACGGCGATTTGAGTTTGCAAGGTACCATCATCGGCTTGGCACAACAGTTCGTT 470608
Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817
|| |||||| | ||| | || |||||||||||| |||||| | ||||| |||
Sbjct 470609 GGGTCCAACAACCTCAACATCCTCGACCCCAACGGTCAATTTGGTACGCGTCTGCAAGGT 470668
Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877
|| || || || || || | || ||||| || || | ||| || | || || |
Sbjct 470669 GGCAAAGACGCGGCCTCGGCTCGTTACATCTTCACGAACGTCTCGGCCATCACCCGTAAT 470728
Query 218878 GTGTTCAATCAGGCCGATG---ATGTGCTCCTTAAGTATCTTGAGGACGATGGT 218928
|| ||| | | ||||||| |||||||| |||| || | |||||||||
Sbjct 470729 GTCTTCCACCCCGCCGATGACAATGTGCTC---GAGTACCTCAACGACGATGGT 470779
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 602575 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 602516
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 602515 CCCGCATCGGGC 602504
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 645492 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 645433
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 645432 CCCGCATCGGGC 645421
>seq73
Length=1263223
Score = 100 bits (110), Expect = 6e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || || ||||| |
Sbjct 865531 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCGATTCTGTTCGAG 865590
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| || |||||| ||||| |||||| ||||||
Sbjct 865591 GCCGATATCCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 865650
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | |||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 865651 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 865710
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 865711 GGCTTCCT 865718
Score = 100 bits (110), Expect = 6e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || ||||| ||||| |||||||||||||| || | | || || ||||| |
Sbjct 872082 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCGATTCTGTTCGAG 872023
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| || |||||| ||||| |||||| ||||||
Sbjct 872022 GCCGATATCCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 871963
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | |||||| || |||| || | ||| |||| ||||| ||||||||
Sbjct 871962 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 871903
Query 279879 GGCTTCCT 279886
||||||||
Sbjct 871902 GGCTTCCT 871895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834864133627
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |