Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12- 23] 147 sequences; 25,410,563 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq109 250 3e-60 seq55 109 7e-18 seq138 105 8e-17 seq101 96.9 4e-14 >seq109 Length=1214152 Score = 250 bits (276), Expect = 3e-60 Identities = 352/491 (72%), Gaps = 19/491 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| ||||||| |||||||| |||| ||| || || Sbjct 11970 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCCATTCGAG 11911 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 11910 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCG 11851 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| || Sbjct 11850 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 11791 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| ||||||| || | |||||||||||| |||||||| | || ||| Sbjct 11790 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCG 11731 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG-T 1630364 || ||||||||||| |||| || |||||| | || |||||| || ||||| Sbjct 11730 GCATTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGTAGGAC 11671 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 11670 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 11627 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 11626 ACGCATGAGCATGTGCTGCGGACGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 11568 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 | || | ||| ||| |||||| ||| || | ||||||||||||| | || || Sbjct 11567 AGCGCTCGAGTGTCTTGAAGCCAAAATAGTTGTAGCCGAAATCGCGGTCGTAGATGACGG 11508 Query 1630544 CGGCGTCGAGG 1630554 || || |||| Sbjct 11507 CGCTGTTGAGG 11497 Score = 145 bits (160), Expect = 9e-29 Identities = 297/450 (66%), Gaps = 0/450 (0%) Strand=Plus/Minus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||| | ||| ||| || |||||||||||||||||| | ||| | |||| || ||||| Sbjct 12421 GGGAGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGATTTGATCGTGCCGAGGTT 12362 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || ||||| | | ||| |||||||||||| ||||||| |||| ||||||||| Sbjct 12361 CTTTTGGTTCGACTTTTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTC 12302 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCG 1628330 || ||| ||| ||| ||| || |||| | || ||||||| | | || ||||| Sbjct 12301 GACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATGGTCTTCTTGGCGCG 12242 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 |||| || | |||||||| ||||| || Sbjct 12241 ACCCTCCTTTTCGTACTTCTCGAACAGGACGCGGAACTCTTCGCCGTAGACTTCGTGGAG 12182 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 |||||| ||||||| || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 12181 GCCGGGGGCCTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCAT 12122 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 || || || |||| || || | ||||| || || || ||| || |||||||| Sbjct 12121 GAACAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCC 12062 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 ||| ||||| ||||| || | |||| | |||||||||||||||||| |||||| Sbjct 12061 GTGATTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGAT 12002 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 12001 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 11972 Score = 96.9 bits (106), Expect = 4e-14 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 ||||||||||||||||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 13578 CTGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCC 13519 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||| | || || ||| |||| ||||||||||||| || | ||||| Sbjct 13518 CGTCTTCAATCCTCGCTTCCAGCCGTAAAAATGCATCGACGTGAGCTGCGCCATCGTCGG 13459 Query 1627101 G-TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 | ||| | | | | |||||| || || |||||||| | | | || ||||| | Sbjct 13458 GCTCGAC-AAATGGATGTTGAGTGATTGCGACTGGTCGATGAATGCACCCCGGTCGGCGG 13400 Query 1627160 CCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || |||||| || | | | | ||||| ||||||||| ||||||||||||| | Sbjct 13399 ACAGATCGATGATGGTCTTTTGCGAGAGTTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 13340 Query 1627220 CG 1627221 || Sbjct 13339 CG 13338 >seq55 Length=1512399 Score = 109 bits (120), Expect = 7e-18 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 869653 GATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTTCATGAACCGGCC 869712 |||||| ||||| |||||| |||| ||||||| | || ||||| || ||||| | Sbjct 263725 GATCTGAAAGCCATAAAAGCACCTCGCCTCTGCGAACTGCACCTCACTCGAGAACCTCTC 263784 Query 869713 GGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGAT 869772 | ||| ||||| ||||| |||||| ||||||||||| || || || || ||| Sbjct 263785 GACCAAATTCTCATTCACGACGCCGTCCGAAGCGGCGAAAAAGGCGAGTACATGGGCGAT 263844 Query 869773 AAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGCGCTGAGGTC 869829 |||| ||| ||||||| | ||||| ||||| | | |||| || |||||| Sbjct 263845 GAAGTAGCGTTCGTCGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGTC 263904 Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCA 869880 | ||| ||||||| ||| | || |||| ||| | ||||||||| |||| Sbjct 263905 GATCTCTTCGGCGGACCAAAAGGACGCCTGGGCTTGTTTGTACATGGCCCA 263955 >seq138 Length=1296910 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || |||| ||||||||||||||||| || Sbjct 681745 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGGAGGTCTGGATCTCGCGCGACGAGA 681686 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | |||||| | ||| ||| || | Sbjct 681685 TGGTCGACTTGCGGTTGTAGGA---CGCGAGCTTGGACGCCTCGCCGGCGAGGCGCTCAA 681629 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| || ||||| Sbjct 681628 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 681569 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 681568 GGTGAACCTGCTTCAACACCTTG 681546 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || |||| ||||||||||||||||| || Sbjct 727732 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGGAGGTCTGGATCTCGCGCGACGAGA 727673 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | |||||| | ||| ||| || | Sbjct 727672 TGGTCGACTTGCGGTTGTAGGA---CGCGAGCTTGGACGCCTCGCCGGCGAGGCGCTCAA 727616 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| || ||||| Sbjct 727615 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 727556 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 727555 GGTGAACCTGCTTCAACACCTTG 727533 Score = 95.1 bits (104), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| ||| || | ||| || |||||||||| || Sbjct 1009210 GCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCGAGGTTTGAATCTCGCGCGACGAGA 1009269 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| | | ||| || || |||||| | ||| ||| |||| Sbjct 1009270 TGGTCGACTTGCGGTTGTACAA---CGCGAGCTTGCACGCCTCGCCGGCGAGGCGCTCGA 1009326 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| || ||||| Sbjct 1009327 AAATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1009386 Query 1254520 GGTGCACCTGCTTGAGCACCT---TGTAGATGAACGACGAGTACG 1254561 |||| || || || | ||| | |||||| | |||||| ||| Sbjct 1009387 GGTGGACTTGTTTCAACACTTTGCTGTAGAGGCGAGACGAGGACG 1009431 >seq101 Length=1647458 Score = 96.9 bits (106), Expect = 4e-14 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| || || ||||| ||||| ||| Sbjct 236336 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCCTTCGGTCTCGGGGAGCCCGTG 236277 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | |||||||| |||||||||||||| || |||||||| Sbjct 236276 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCGATGCTGTCGATCCCCGCGACCAAGGG 236218 Query 19172 ATTCGAGATTGG 19183 ||||||||||| Sbjct 236217 TTTCGAGATTGG 236206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127136491599