Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12- 23] 147 sequences; 25,410,563 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq109 206 4e-47 seq138 122 1e-21 seq55 116 6e-20 seq101 86.0 1e-10 >seq109 Length=1214152 Score = 206 bits (228), Expect = 4e-47 Identities = 201/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| ||||||| |||||||| || | ||| || || Sbjct 11970 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCCATTCGAG 11911 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 11910 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCG 11851 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| || Sbjct 11850 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 11791 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| ||||||| | || |||||||||||| |||||| | | || ||| Sbjct 11790 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCG 11731 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 |||||||||||||| |||| Sbjct 11730 GCATTGAAGAGCGTCGGCG 11712 Score = 159 bits (176), Expect = 5e-33 Identities = 295/439 (67%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||||||||| | ||| | | ||||| ||||||| ||||| Sbjct 12410 ACTCGATGATCTCGGTGCACAGGTTCGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCG 12351 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | ||| |||||||||||| |||||| |||| || ||||||| ||| ||| Sbjct 12350 ACTTTTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCT 12291 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || ||| || |||||| | ||||||| | | || | ||||| |||| Sbjct 12290 CGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATGGTCTTCTTGGCGCGACCCTCCTTTT 12231 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | ||| || || | |||||| | ||||| |||||||| |||| Sbjct 12230 CGTACTTCTCGAACAGGACGCGGAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCCT 12171 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| ||||| | ||| |||||| | | | | || || ||| ||||| ||| Sbjct 12170 CGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGATCGG 12111 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || | | |||||||| || || ||| || ||||||||||| ||||| Sbjct 12110 GGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTCTTGC 12051 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||| || | |||| || |||||||||||||||||| |||||| || ||||| | Sbjct 12050 GAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 11991 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 11990 CGGGACGCTTGTTGCCACC 11972 Score = 105 bits (116), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 ||| || || ||| |||||| |||||||||||| |||||||| ||||||||||| Sbjct 63176 GAACCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGGCGAGGAC 63235 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC---GAGACCCAGTGGACCGTGTCGGC 796292 |||| ||| |||| ||||||||| ||||| | |||||| | | |||| Sbjct 63236 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 63295 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 | | ||| | ||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 63296 GGACAAGTCCATCTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTAC 63347 Score = 87.8 bits (96), Expect = 3e-11 Identities = 169/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||||||||||| ||| || | |||| | || ||||||| ||||||||||| Sbjct 13577 TGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 13518 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| | || || ||| |||| ||||||||||||| | || ||| ||| Sbjct 13517 GTCTTCAATCCTCGCTTCCAGCCGTAAAAATGCATCGACGTGA--GCTGCGCCATCGTCG 13460 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || | | || |||||| || || |||||||| | | | |||||||| Sbjct 13459 GGCTCGACA-AATGGATGTTGAGTGATTGCGACTGGTCGATGAATGCACCCCGGTCGGCG 13401 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || |||||| | | ||| || | ||||| ||||||||| | | ||||||||| Sbjct 13400 GACAGATCGATGAT-GGTCTTTTGCGAGAGTTCCCAGACGGTCTTGTAGATGGCCTTGAG 13342 Query 2069487 AT 2069488 || Sbjct 13341 AT 13340 >seq138 Length=1296910 Score = 122 bits (134), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || |||| Sbjct 681769 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGG 681710 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || |||| || | Sbjct 681709 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-AGGACGCG--AGCTTGG 681653 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 681652 ACGCCTCGCCGGCGAGGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 681593 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 681592 CCTTGTTCGAGATACCGGTGTCGGGGTGAACCTGCTTCAACACCTTG 681546 Score = 122 bits (134), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || |||| Sbjct 727756 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGG 727697 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || |||| || | Sbjct 727696 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-AGGACGCG--AGCTTGG 727640 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 727639 ACGCCTCGCCGGCGAGGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 727580 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 727579 CCTTGTTCGAGATACCGGTGTCGGGGTGAACCTGCTTCAACACCTTG 727533 Score = 109 bits (120), Expect = 9e-18 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 1009186 CCTTGGTTCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 1009245 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| || |||||||| | ||| || ||||| |||| | |||| || || Sbjct 1009246 AGGTTTGAATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-ACAACGCG--AGCTTGC 1009302 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| |||| ||||||||||| |||||||| | ||| ||||| Sbjct 1009303 ACGCCTCGCCGGCGAGGCGCTCGAAAATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1009362 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || || || | ||| ||| Sbjct 1009363 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGTTTCAACACTTTG 1009409 >seq55 Length=1512399 Score = 116 bits (128), Expect = 6e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| ||||| ||||| | | || ||||| || ||| | || ||| |||||| Sbjct 263740 AAAGCACCTCGCCTCTGCGAACTGCACCTCACTCGAGAACCTCTCGACCAAATTCTCATT 263799 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||||| |||||| ||||||||||||||||| || || ||| |||| || ||||| Sbjct 263800 CACGACGCCGTCCGAAGCGGCGAAAAAGGCGAGTACATGGGCGATGAAGTAGCGTTCGTC 263859 Query 796260 GTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGT 796316 || | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 263860 GTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGTCGATCTCTTCGGCGGA 263919 Query 796317 CCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| |||| ||| | ||||||||| |||| ||| Sbjct 263920 CCAAAAGGACGCCTGGGCTTGTTTGTACATGGCCCAGATC 263959 >seq101 Length=1647458 Score = 86.0 bits (94), Expect = 1e-10 Identities = 197/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 313772 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCAGGT 313831 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 || |||||| | ||||||| ||||| ||||||| | || | | ||||| || || Sbjct 313832 CGGCACAAGCTCGTCATCCTTGATGAAGCCGACTCGATGACCCCAGGAGCCCAACAAGCT 313891 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 |||||| ||| ||||||| | | ||||||| || || || || | || |||||| | Sbjct 313892 CTCCGAAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACCAG 313951 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | ||||||| || |||||||||||| | | || | || Sbjct 313952 AGCAACAAGATCATCGAGCCGATCCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 314011 Query 2019387 ACCGACGCCCAGATCGCCG-CGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | ||| ||| || | || | |||| ||| |||||| ||| |||||||| Sbjct 314012 AGCGATGCCGAG-TTGCTGAGGCGTTTGCTGGAGATTTGCGAAATTGAAAAGGT 314064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230762939533