Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12-
23] 147 sequences; 25,410,563 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq109 354 9e-93
seq55 143 3e-29
>seq109
Length=1214152
Score = 354 bits (392), Expect = 9e-93
Identities = 539/765 (70%), Gaps = 2/765 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| |||||| | || ||||||||| ||||| | ||| ||| || | |||
Sbjct 11619 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCCTACA 11678
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | ||||| || |||||| |||| || || ||||| || |||||
Sbjct 11679 ACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAATGCCGGTACCC 11738
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|||||| ||| | ||| |||||| |||| |||||||||| |||||||| || ||||
Sbjct 11739 CTCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATTGAAGGCA 11798
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| ||||||||| ||| || | |||||||||| | |||||||||||| |
Sbjct 11799 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTAA 11858
Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492
| | ||| |||| |||| |||| | ||| || ||||||||| | | |||
Sbjct 11859 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAACGGCTACTCGAATG 11918
Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552
| ||||| || ||||| ||||||| ||||||||| || || |||||| |||| |||||
Sbjct 11919 GCATCGTCCCCATGCTGCGCGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 11978
Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612
||||| || | ||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 11979 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGT 12038
Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672
| || || || || |||||| || | ||||| | ||| ||||| || || |
Sbjct 12039 TCCTGGACCTTCGCAAGAATCACGGCAAGGAAGAAGTCCGCGCTCGTGATCTCTTCTTTG 12098
Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732
| || ||||| || || || |||||| | || ||| | || |||||| |||
Sbjct 12099 CGCTCTGGATCCCCGATCTGTTCATGGAGCGTGTCGAGGCCGCCGGCGAGTGGCCCCTCT 12158
Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792
| ||||| |||| |||||||||||| | |||||||| || ||||| || |||
Sbjct 12159 TCTGCCCCGCCGAGGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAGTTCCGCGTCCTGT 12218
Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851
||| || ||||| | |||| ||| |||||||| || |||| || | |||
Sbjct 12219 -TCGAGAAGTACGAAAAGGAGGGTCGCGCCAAGAAGACCATCCCCGCGCAAAAGCTTTGG 12277
Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911
| || |||||| || |||||| ||||| || | || | |||| ||||||||| |
Sbjct 12278 TACGCGATCCTCGAGGCCCAGGTCGAGACCGGCAACCCCTTCATGCTCTACAAGGACGCC 12337
Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956
| ||| | ||| ||||| |||||| ||||| |||||||||
Sbjct 12338 GCGAACAAAAAGTCGAACCAAAAGAACCTCGGCACGATCAAATCG 12382
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785
|||||||| || ||| ||| || ||||| | | || |||| | || || ||
Sbjct 13341 TCTCAAGGCCATCTACAAGACCGTCTGGGAACTCTCGCAAAAGACCATCATCGATCTGTC 13400
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|| || || ||||| | |||||||||||| || || || |||||| || || ||
Sbjct 13401 CGCCGACCGGGGTGCATTCATCGACCAGTCGCAATCACTCAACATCCATTTGTCGAGCCC 13460
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| |||| || | | |||||||| |||||||| |||||| ||| | ||||||||
Sbjct 13461 GACGATGGCGCAGCTCACGTCGATGCATTTTTACGGCTGGAAGCGAGGATTGAAGACGGG 13520
Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930
|||||||| |||| || ||||||
Sbjct 13521 CATGTACTACTTGCGCACGCGCGCC 13545
>seq55
Length=1512399
Score = 143 bits (158), Expect = 3e-29
Identities = 210/297 (71%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087
|||||||||||| || | |||||| || ||||||||| ||| ||||| ||||| ||
Sbjct 470704 CGTGAAGATGTAACGAGCCGAGGCCGCGTCTTTGCCACCTTGCAGACGCGTACCAAATTG 470645
Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147
|| ||| ||||||| |||||||||||||| || ||||| | || ||||| |
Sbjct 470644 ACCGTTGGGGTCGAGGATGTTGAGGTTGTTGGACCCAACGAACTGTTGTGCCAAGCCGAT 470585
Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
|| || || |||| |||| || ||||| || ||||||| ||||| |||| || ||
Sbjct 470584 GATGGTACCTTGCAAACTCAAATCGCCGTGATGGTACGCCGAGTGCTCGGCGACATAACC 470525
Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267
|||| || | ||||| || ||| ||||| || ||||| || || | | ||
Sbjct 470524 GCCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGAC 470465
Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
|||||| || ||||| ||||| || | ||| ||| ||||||||| | ||||
Sbjct 470464 CTTGCGTTGACCCGGTTTAAAACCATCAATGACGGAAGGGATCGAACGCACGTTGTC 470408
Score = 123 bits (136), Expect = 3e-23
Identities = 205/296 (69%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| || || || |||||||| ||||||||||| |||||
Sbjct 470703 GTGAAGATGTAACGAGCCGAGGCCGCGTCTTTGCCACCTTGCAGACGCGTACCAAATTGA 470644
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | || || | || ||| |||||||||| || || || | ||| |||||| ||
Sbjct 470643 CCGTTGGGGTCGAGGATGTTGAGGTTGTTGGACCCAACGAACTGTTGTGCCAAGCCGATG 470584
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| |||||||| | ||| || || || || ||||||| ||||| || || || ||
Sbjct 470583 ATGGTACCTTGCAAACTCAAATCGCCGTGATGGTACGCCGAGTGCTCGGCGACATAACCG 470524
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
||| || | ||||| || || ||||| || ||||| ||| | | | |||
Sbjct 470523 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 470464
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
||||| |||| || || | |||||| ||| ||||||||||||| | ||||
Sbjct 470463 TTGCGTTGACCCGGTTTAAAACCATCAATGACGGAAGGGATCGAACGCACGTTGTC 470408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214994490600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |