Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015415.1_202016-12- 23] 147 sequences; 25,410,563 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq63 168 2e-36 seq55 163 7e-35 seq101 159 8e-34 >seq63 Length=908128 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || ||||||||||||||||| || || ||| Sbjct 127553 CAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 127612 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 127613 ACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 127672 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | ||||| || || || ||| || Sbjct 127673 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACATC 127732 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 127733 CAAAAGGAGTCGACCCTCCA-CTTG 127756 >seq55 Length=1512399 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || |||||||||||||| || ||| ||| Sbjct 1270625 CAAATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 1270566 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| |||||||| || || ||||||||| Sbjct 1270565 ACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAGCAA 1270506 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | ||||| || || || ||| || Sbjct 1270505 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCGGACTACAACATC 1270446 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 1270445 CAAAAGGAGTCGACCCTCCA-CTTG 1270422 >seq101 Length=1647458 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct 463720 CAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCGGAC 463779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 463780 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 463839 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| |||||| || Sbjct 463840 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTATAACATC 463899 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 463900 CAGAAGGAGTCGACGCTCCA-CTTG 463923 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||||||||| |||||||| || || ||| Sbjct 462808 CAAATCTTTGTCAAGACCCTGACCGGTAAAACGATCACGCTCGAGGTCGAGTCGTCGGAC 462867 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 462868 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 462927 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 462928 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 462987 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 462988 CAGAAGGAGTCGACGTTGCA-CTTG 463011 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||||||||| |||||||| || || ||| Sbjct 463492 CAAATCTTTGTCAAGACCCTGACCGGTAAAACGATCACGCTCGAGGTCGAGTCGTCGGAC 463551 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || ||||| || |||||||| Sbjct 463552 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 463611 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 463612 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 463671 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 463672 CAGAAGGAGTCGACGTTGCA-CTTG 463695 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct 689802 CAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTCGAGTCGTCGGAC 689861 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 689862 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAG 689921 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 689922 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 689981 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 689982 CAGAAGGAGTCGACGTTGCA-CTTG 690005 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||||||||| |||||||| || || ||| Sbjct 690030 CAAATCTTTGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTCGAGTCGTCGGAC 690089 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || |||||||| |||||||| Sbjct 690090 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAGCAG 690149 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || || || Sbjct 690150 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAATATC 690209 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 690210 CAGAAGGAGTCGACGTTGCA-CTTG 690233 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct 462580 CAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCGGAC 462639 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 462640 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 462699 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 462700 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 462759 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 462760 CAGAAGGAGTCGACGTTGCA-CTTG 462783 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct 463036 CAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCGGAC 463095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 463096 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 463155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 463156 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 463215 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 463216 CAGAAGGAGTCGACGTTGCA-CTTG 463239 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| |||||||| || || ||| Sbjct 463264 CAAATCTTCGTCAAGACCCTGACCGGCAAAACGATCACGCTCGAGGTTGAGTCGTCGGAC 463323 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 463324 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 463383 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 463384 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAACATC 463443 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 463444 CAGAAGGAGTCGACGTTGCA-CTTG 463467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728932847518