Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq68 194 2e-44 seq114 149 6e-31 seq70 145 8e-30 seq101 136 4e-27 seq67 129 6e-25 seq98 118 1e-21 >seq68 Length=952209 Score = 194 bits (214), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||||||||| || || ||||||| ||| ||| ||||| |||||||||||| Sbjct 96139 GTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTGTCCAAGGACAT 96198 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 96199 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 96258 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||||||||||||||| |||||||||| ||| || || Sbjct 96259 CTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 96318 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 96319 GGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 96361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| || ||| | |||||||| |||| ||| |||| Sbjct 96858 TTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTCTCCAAC 96917 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||| | |||||||| || || ||||||||| || Sbjct 96918 GAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTG 96961 >seq114 Length=793728 Score = 149 bits (164), Expect = 6e-31 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 567499 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567558 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 567559 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 567617 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||||||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 567618 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 567677 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 567678 CATCCAGAAGGAGTCGACGCTGCA 567701 Score = 149 bits (164), Expect = 6e-31 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 567955 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 568014 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 568015 GACACGATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 568073 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 568074 ACAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTCGCCGATTACAA 568133 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 568134 TATCCAGAAGGAGTCGACGCTGCA 568157 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 567727 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567786 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| || || | ||||| ||||| || ||| | ||||| Sbjct 567787 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 567845 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 567846 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 567905 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | ||||| || Sbjct 567906 TATCCAGAAGGAGTCGACGCTCCA 567929 >seq70 Length=566626 Score = 145 bits (160), Expect = 8e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 51676 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51735 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 51736 GACACGATTGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 51794 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| |||||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 51795 ACAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 51854 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | ||||| || Sbjct 51855 CATCCAGAAGGAGTCGACGCTCCA 51878 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 51220 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51279 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| || || | ||||| ||||| || ||| | ||||| Sbjct 51280 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 51338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 51339 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCGCCGATTACAA 51398 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | ||||| || Sbjct 51399 CATCCAGAAGGAGTCGACGCTCCA 51422 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 51904 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51963 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| || || | ||||| ||||| || ||| | ||||| Sbjct 51964 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 52022 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 52023 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 52082 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| || | ||| |||| Sbjct 52083 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 52118 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 51448 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51507 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| || || | ||||| ||||| || ||| | ||||| Sbjct 51508 GACACGATTGACAACG-TCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 51566 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 51567 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 51626 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | ||||| || Sbjct 51627 TATCCAGAAGGAGTCGACGCTCCA 51650 >seq101 Length=1000389 Score = 136 bits (150), Expect = 4e-27 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 688580 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 688521 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || |||||||| | |||||| Sbjct 688520 ACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 688462 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||| |||||| Sbjct 688461 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAAC 688402 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || |||||| | || || || | ||| | ||| || | || || Sbjct 688401 ATTCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 688355 >seq67 Length=473732 Score = 129 bits (142), Expect = 6e-25 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| || || || || || |||||||| || |||||| |||| ||||| | |||| Sbjct 309062 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 309003 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | |||| ||||| || || | ||||| || |||||||| | ||||||| Sbjct 309002 CACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 308944 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 |||| ||||||| ||| ||||| ||||| || || | |||||| | ||||||||||| Sbjct 308943 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 308884 Query 40871 TCCAGAAGGAGGCCACGCTGCAT 40893 |||| |||||| | || || ||| Sbjct 308883 TCCAAAAGGAGTCGACCCTCCAT 308861 >seq98 Length=574835 Score = 118 bits (130), Expect = 1e-21 Identities = 167/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||| | ||| | ||||| || ||| ||| ||| ||| | ||||| Sbjct 180557 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 180498 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||| ||||||| | | | | ||| || |||| ||| | || ||| Sbjct 180497 GGCAGCGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 180438 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| |||||||| || || |||| || ||||| |||| ||| | Sbjct 180437 CACGTGCTCGCCTTCTTCGCCGCTTCAGATGGGGTCGTGAATGAGAACTTGGTTGAGAGG 180378 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||||||| | ||||||||| ||||||| || |||||||||||| Sbjct 180377 TTCTCAAGTGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGCTTTCAGATC 180324 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||| Sbjct 179863 TTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCTGGCCTCTCTTTCTCCAAC 179804 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 179803 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 179744 Query 117206 TTG 117208 ||| Sbjct 179743 TTG 179741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218130920160