Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq101 141 1e-28
seq114 138 1e-27
seq70 125 8e-24
seq67 125 8e-24
>seq101
Length=1000389
Score = 141 bits (156), Expect = 1e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| || | || |||||||||||| |||||||| || ||||| || | || ||
Sbjct 688372 CACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGCGAGAGTGCGGCCATCCTC 688431
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| || ||||| ||||| || |||||||| | ||| | || ||||||||
Sbjct 688432 GAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 688491
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
||| || |||| ||| | | | ||||||| ||| || || |||| |||||||| |
Sbjct 688492 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCT 688550
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182
||||||| || ||||| |||||||||||||
Sbjct 688551 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 688580
>seq114
Length=793728
Score = 138 bits (152), Expect = 1e-27
Identities = 176/237 (74%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
|||| ||||| |||| | ||| | |||||| |||| || |||||| || |||||||
Sbjct 568189 CCTACTGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGT 568130
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
|||| || || || || | || || |||||||| |||||||| ||||| || || ||||
Sbjct 568129 AATCGGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGT 568070
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCT 43126
| | || | || |||||||||| ||| | || | |||| ||| | | | ||||||
Sbjct 568069 CTGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGA 568012
Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || |||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 568011 GGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567955
Score = 123 bits (136), Expect = 3e-23
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| | ||| | |||||| |||| || |||||| || || |||||||| ||
Sbjct 567725 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 567666
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || ||||| || | |||||||||||| | ||
Sbjct 567665 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 567606
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134
| || |||||||||| ||| | || | |||| ||| | | | |||||| || || |
Sbjct 567605 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 567548
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| |||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 567547 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567499
>seq70
Length=566626
Score = 125 bits (138), Expect = 8e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | ||| | |||||| || | || |||||| || || |||||||| ||
Sbjct 51446 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 51387
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| |||||||| ||||| || || ||||| | ||
Sbjct 51386 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 51327
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCAC 43135
| | |||||||||| ||| || ||||| ||| | || |||||| || || ||
Sbjct 51326 ATACCCTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51268
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 51267 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51220
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | ||| | |||||| || | || |||||| || |||||||| || ||
Sbjct 51674 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 51615
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| ||||| || || | |||||| ||||| | ||
Sbjct 51614 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 51555
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCAC 43135
| | |||||||||| ||| || ||||| ||| | || |||||| || || ||
Sbjct 51554 ATACCCTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51496
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 51495 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51448
Score = 118 bits (130), Expect = 1e-21
Identities = 168/234 (72%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
||||| || || | | ||||| |||||| || | || |||||| || || |||||
Sbjct 52136 TATTGACCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAG 52077
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| || || || || | || || |||||||| ||||| || || | |||||| |||||
Sbjct 52076 TCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCT 52017
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGA 43129
| || | | |||||||||| ||| || ||||| ||| | || |||||| ||
Sbjct 52016 GGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGA-CGTTGTCAATCGTGTCCGAGGA 51958
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || |||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 51957 CTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51904
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | ||| | |||||| || | || |||||| || || |||||||| ||
Sbjct 51902 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 51843
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || || || ||||| || || ||||| | ||
Sbjct 51842 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 51783
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCAC 43135
| || ||||||||| ||| || |||| ||| | || |||||| || || ||
Sbjct 51782 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 51724
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| |||||| || ||||| || || ||||| || |||||||||||
Sbjct 51723 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51676
>seq67
Length=473732
Score = 125 bits (138), Expect = 8e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | || ||||||||| || ||||| || |||| || || | || ||
Sbjct 308856 ACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 308915
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||| || ||||| ||||| || |||||||| | ||| | || |||||||| |
Sbjct 308916 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 308975
Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
|| || |||| ||| | | | ||||||| ||| || || |||| ||||| || ||
Sbjct 308976 ATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTT 309034
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGC 43181
|||||| || ||||| ||||||||||||
Sbjct 309035 GCCCGTAAGAGTCTTGACAAAGATTTGC 309062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571816413478480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |