Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq114 105 4e-18
seq67 105 4e-18
seq70 96.9 2e-15
>seq114
Length=793728
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || || ||||| |||||||| |||| ||| ||| | ||
Sbjct 567710 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 567651
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || | ||||||||||| ||| | || |||||||||
Sbjct 567650 TCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 567591
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | |||| || | || ||||| || | |||||| ||
Sbjct 567590 TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 567531
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|||||||| || || || || ||||| ||||||
Sbjct 567530 TTGCCGGTCAGGGTCTTGACGAAGATTTGCATC 567498
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || || ||||| || |||||||||| ||| ||| | ||
Sbjct 567938 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCC 567879
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| || || || | ||||| ||||| ||| | | |||||||||
Sbjct 567878 TCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCC 567819
Query 34298 GCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
||||| | ||| || | | | |||| || | || ||||| || | |||||| |
Sbjct 567818 TGGATCTT--GGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCG 567761
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||||||| || || || || |||||||||||
Sbjct 567760 TCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567727
>seq67
Length=473732
Score = 105 bits (116), Expect = 4e-18
Identities = 141/191 (74%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
|| || || ||||||||||||| | || || ||| | || || | ||||||||| |||||
Sbjct 308874 TCCTTTTGGATGTTGTAGTCGGCCAAGGTG-CGGCCATCCTCGAGCTGCTTGCCGGCGAA 308932
Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316
||||| || |||||||| | |||| | || |||||||| ||||| ||| | |
Sbjct 308933 GATGAGACGTTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGT 308991
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| | |||| |||| ||| ||||| || | ||||| || ||||| || ||||| || |
Sbjct 308992 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 309051
Query 34377 CAAAGATCTGC 34387
||||||| |||
Sbjct 309052 CAAAGATTTGC 309062
>seq70
Length=566626
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | |||||||| ||| | || || ||||| |||||||||||||
Sbjct 52130 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 52071
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || || | ||||||||| || || || | ||||| ||||| |||
Sbjct 52070 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 52011
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||||||| || | ||| ||| || | | | |||| || | || ||||
Sbjct 52010 ATACCCTCCTTGTC--CTGGATCTTGGTTTTGACGTTGTCAATCGTGTCCGAGGACTCGA 51953
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | |||||| || |||||||| || || || || ||||| |||||
Sbjct 51952 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071346384960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |