Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq79 269 2e-67 seq67 123 2e-23 seq101 122 8e-23 seq70 98.7 9e-16 seq114 95.1 1e-14 >seq79 Length=767515 Score = 269 bits (298), Expect = 2e-67 Identities = 962/1494 (64%), Gaps = 52/1494 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 4803 GAAGTGTAAGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 4744 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 4743 ATTGGCGCGCACACAAGCGAGTTGCGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 4684 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||||||| ||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 4683 GACCAGTCCCACAAATCACTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 4627 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCATA 22722 || ||||| || ||| || ||| ||| | ||| Sbjct 4626 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATA 4567 Query 22723 ------TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAA 22776 | |||| || || |||| || ||| | |||| ||| || || |||||||| Sbjct 4566 GCAAAGTTGCGCGCCATGT-CGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAA 4508 Query 22777 GATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCA 22832 ||||| |||||| | | | ||| | ||||| ||| ||||||| || || Sbjct 4507 GATTTGCTTGTTGAGCTTGCGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCA 4452 Query 22833 CGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACA 22892 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 4451 TGAACGCGTCGGCTAGACCTTGCACTCCGATGCCGATGGGGCGGTGACGGAAGTTGGAGT 4392 Query 22893 CTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCA 22952 | |||||| | ||||| | || ||||| | | ||||||||| | | Sbjct 4391 TCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGA 4332 Query 22953 CAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACT 23012 ||| || | | ||||||||| ||||| || | | || || Sbjct 4331 CAACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TTCTTGATGAAGCT 4274 Query 23013 TGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTA 23072 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 4273 CGGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGA 4215 Query 23073 CAATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTT 23130 || ||||| || | ||| | || |||| |||||||| | || | ||||| | ||| Sbjct 4214 TGATCTCGGTGCACAAATT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTC 4156 Query 23131 TCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGAT 23190 | | |||| | ||||||||||||||| | || |||| || |||||||| | ||||| Sbjct 4155 TTGTTTGCG-GCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAG 4097 Query 23191 GATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGT 23249 || || ||| | | || ||| | | |||| | | | || || | |||| Sbjct 4096 AATTGCGTACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGACCCTCCTTTTCGT 4038 Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309 | || | | |||| || | || || | || || ||| || ||||| | || Sbjct 4037 ATTTCTCGAACAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAGACCGGGGGCTTCGG 3978 Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 || || | ||| ||| | | || || || ||| || ||||| || | Sbjct 3977 CGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAA 3918 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| || || | || || || || ||||| || ||||| |||||| |||||| | Sbjct 3917 TCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAA 3858 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||| || || || ||||| || ||||||||||||||||| | || || || || | Sbjct 3857 GGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGG 3798 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| || || |||||||| || || ||||| ||||| || | ||||| | Sbjct 3797 GACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGG 3738 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| ||||| || |||| ||| || | || || | || || | || Sbjct 3737 GGACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGT 3678 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||| | | ||||| || || ||| | | || || || | ||||| || || | Sbjct 3677 TGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCG 3618 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 ||||||||||||| ||||| || || || ||| ||||||||||||||| || | | Sbjct 3617 TGTCGTAGATGCCTTCGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCT 3558 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 ||| | ||||| |||| ||| || ||||| |||||| |||||||| | | | Sbjct 3557 GCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGG 3498 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || ||||||| | | | || || ||||| | ||||| || |||| ||||| Sbjct 3497 ACATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGA 3438 Query 23850 CGCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGAT 23906 | ||||| | ||||| || || | || ||||| | ||||| ||| | || | Sbjct 3437 CACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTT---GCCGTCAATGCGAAGCAAGT 3381 Query 23907 ATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 | || || | | |||||| || ||||| |||| ||| || || || |||| Sbjct 3380 AGGAGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 3327 >seq67 Length=473732 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 309068 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 309009 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 309008 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 308950 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | || || || || ||| | Sbjct 308949 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 308890 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || ||| |||| || Sbjct 308889 ACAACATCCAAAAGGAGTCGACCCTCCATTTGGTCCT 308853 >seq101 Length=1000389 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 688580 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 688521 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 688520 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 688462 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| ||||| ||| | || || ||| | |||||| ||| Sbjct 688461 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAAC 688402 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 |||||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 688401 ATTCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 688343 >seq70 Length=566626 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 51220 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51279 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||| || | || || ||||| Sbjct 51280 GACACGATTGACAACGTCAAAACCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 51339 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || | || | |||||| ||| Sbjct 51340 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCGCCGATTACAAC 51399 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 51400 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 51431 >seq114 Length=793728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 567499 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567558 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 567559 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 567618 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || || | |||||| ||| Sbjct 567619 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 567678 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 567679 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 567710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 567955 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 568014 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 568015 GACACGATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 568074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || ||||||||||| ||| | || || Sbjct 568075 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGA 568109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765475034720