Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_003345.1 Length=77670 Score E Sequences producing significant alignments: (Bits) Value seq110 87.8 9e-13 seq85 87.8 9e-13 seq75 87.8 9e-13 seq56 87.8 9e-13 >seq110 Length=50150 Score = 87.8 bits (96), Expect = 9e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 20743 TAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTAGTCGAAGGTTCGAGTCCTTC 20800 |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 18805 TAGCTCAGTTGGTAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAGTCCTTC 18862 >seq85 Length=75362 Score = 87.8 bits (96), Expect = 9e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 20743 TAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTAGTCGAAGGTTCGAGTCCTTC 20800 |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 1900 TAGCTCAGTTGGTAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAGTCCTTC 1843 >seq75 Length=349689 Score = 87.8 bits (96), Expect = 9e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 20743 TAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTAGTCGAAGGTTCGAGTCCTTC 20800 |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 253673 TAGCTCAGTTGGTAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAGTCCTTC 253730 >seq56 Length=175490 Score = 87.8 bits (96), Expect = 9e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 20743 TAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTAGTCGAAGGTTCGAGTCCTTC 20800 |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct 121094 TAGCTCAGTTGGTAGAGCACCTGACTTTTAATCAGGGTGTCGAAGGTTCGAGTCCTTC 121151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248418697416906