Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq79 118 2e-21 seq68 113 7e-20 >seq79 Length=767515 Score = 118 bits (130), Expect = 2e-21 Identities = 345/529 (65%), Gaps = 2/529 (0%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | | |||||| | | || Sbjct 3710 ACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAATAACACCGCGCGC 3769 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | || ||||| | || || ||| Sbjct 3770 TACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGG 3829 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || | || | ||||| ||| ||| || || | || Sbjct 3830 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGC 3889 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | |||| || |||||| | || ||| | |||||| |||| ||| | | | Sbjct 3890 GCTCGTGATCTCTTTTTGGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCC 3949 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| ||||| ||| | ||||||| | | |||||||| ||| || ||| Sbjct 3950 GCCGGCGACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTATGGC 4009 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGT 97165 |||||||| ||||| || | | ||||| | ||||| || | | |||||| | Sbjct 4010 GAAGAGTTCAAGGCCTTGTTCGAGAAATACGAAAAGGAGGGTCGCGCCAAGAAGACGA-T 4068 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | || | | | || ||| | || || | ||| ||||| || ||||| | || | Sbjct 4069 CCCCGCGCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTT 4128 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| ||||||||||| ||| || || |||||| || | ||||| ||||| Sbjct 4129 CATGCTCTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAA 4188 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||| ||||||| || || | |||||| | | ||||||||| Sbjct 4189 GTCGTCGAATTTGTGCACCGAGATCATCGAGTACTCGGCGCCGGACGAG 4237 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | |||||| || | ||||| || Sbjct 5154 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTCGGCCGATCGA 5213 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || |||||||||| |||||| |||| | || ||| ||||||| | | | Sbjct 5214 GGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCAC-TTGTCGAGCCCGACGA-TGG 5271 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| || || |||||||| ||||||| Sbjct 5272 CGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGGTATGTACT 5331 Query 98215 A 98215 | Sbjct 5332 A 5332 >seq68 Length=952209 Score = 113 bits (124), Expect = 7e-20 Identities = 175/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| ||||| |||| ||||||||||| | ||||||| | || || Sbjct 96128 ATCTGGGCACAGTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTG 96187 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 96188 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 96246 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || ||||||||||| || || | || Sbjct 96247 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCG 96306 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| || |||||||| Sbjct 96307 ATTCTCTGGTGAG--GTCCAGTCAGCCGAGG-CTCGATGCTTCTACGGTTTTCAAATCAT 96363 Query 125255 GAT 125257 ||| Sbjct 96364 GAT 96366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057662302160