Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq101 181 2e-41 seq48 163 4e-36 >seq101 Length=1000389 Score = 181 bits (200), Expect = 2e-41 Identities = 160/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || |||||||| || |||||||| ||||| |||||||||||||| Sbjct 198008 CGCGACAACATCCAGGGTATCACCAAACCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 197949 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || ||| |||| ||||||| ||| | ||| | |||||||||||| Sbjct 197948 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGCGTTCTCAAGATCTTCCTC 197889 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||||||||| || || ||||| |||||| Sbjct 197888 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 197829 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 197828 TCGCTCGATGTCGTCTACGC 197809 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 683932 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 683991 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 683992 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 684051 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 684052 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 684111 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 684112 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 684167 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 763673 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 763614 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 763613 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 763554 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 763553 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 763494 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 763493 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 763438 >seq48 Length=2602331 Score = 163 bits (180), Expect = 4e-36 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 449743 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 449684 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 449683 GTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 449624 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| |||||||| || | || ||| ||||| ||||| || || ||||| |||||| Sbjct 449623 GAGAACGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 449564 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 449563 TCGCTCGATGTCGTCTACGC 449544 Score = 158 bits (174), Expect = 2e-34 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 497814 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 497873 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 497874 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 497933 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||||| || | || ||| ||||| ||||| || || ||||| |||||| Sbjct 497934 GAGAATGTTATCCGCGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 497993 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 497994 TCGCTCGATGTCGTCTACGC 498013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075048225038