Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq70 113 4e-20 seq114 111 1e-19 >seq70 Length=566626 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 51448 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51507 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || ||| | || ||||| || || ||||| || || Sbjct 51508 GACACGATTGACAACGTCAA--AACCAAGA--TCCAGGACAAGGAGGGTATTCCCCCAGA 51563 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| ||||| || | || |||| ||||| | | ||| || Sbjct 51564 CCAACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTA 51623 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || ||||| || || ||||| | || ||||||| Sbjct 51624 CAATATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 51674 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 51904 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 51963 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || ||| | || ||||| || || ||||| || || Sbjct 51964 GACACGATTGACAACGTCAA--AACCAAGA--TCCAGGACAAGGAGGGTATTCCCCCAGA 52019 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| ||||| || | || |||| ||||| | | ||| || Sbjct 52020 CCAACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTA 52079 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || ||||| || || ||||| Sbjct 52080 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 52115 >seq114 Length=793728 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 567955 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 568014 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| || || ||||| || || Sbjct 568015 GACACGATTGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGA 568070 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || || || ||||| || | || |||| ||||| | | |||||| Sbjct 568071 CCAACAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTCGCCGATTA 568130 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||| || || || || ||||| || || ||||| | || |||| ||| Sbjct 568131 CAATATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 568182 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| |||| || ||||| || Sbjct 567727 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 567786 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || ||| | || ||||| || || ||||| || || Sbjct 567787 GACACGATTGACAACGTCAA--AACCAAGA--TCCAGGACAAGGAGGGTATTCCCCCAGA 567842 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| ||||| || | || |||| ||||| | | ||| || Sbjct 567843 CCAACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTA 567902 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || ||||| || || ||||| | || ||||||| Sbjct 567903 CAATATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGAGGAGG 567953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327123323290