Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq98 93.3 9e-14
seq101 89.7 1e-12
>seq98
Length=574835
Score = 93.3 bits (102), Expect = 9e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||| |||| || ||||| || || |||| || | | ||||| ||
Sbjct 430249 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 430308
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | |||||| ||||||| | || || ||| |||||||||||||
Sbjct 430309 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 430368
Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015
|| || ||| |||| | || | ||||| |||||| || |||||||| ||| |
Sbjct 430369 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 430427
Query 218016 GGGTCTTCAG 218025
|||||| |||
Sbjct 430428 GGGTCTGCAG 430437
Score = 91.5 bits (100), Expect = 3e-13
Identities = 248/380 (65%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| |||||| |||||||| | || || |||||| | || | ||| |||||||||
Sbjct 430933 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 430992
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
|| | ||||| | |||||| || || ||| || | || | ||||||||
Sbjct 430993 TCTGTAATTGATGGGTTTAAGCCAGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 431052
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|| || || || || ||||||| || || ||||| || | || || |
Sbjct 431053 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGCGGTTACGTTGCTGAGCACTCGGCG 431112
Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757
|||||||||||||| |||| |||| || ||||| | ||| |||| || | | ||
Sbjct 431113 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATTATCGGCCTGGCGCAACAGTTCGTC 431172
Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817
|| |||||| | ||| | || ||| |||||||| |||||| | ||||| |||
Sbjct 431173 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 431232
Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877
|| || || ||||| || | || ||||| || || | || || | |||||
Sbjct 431233 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCGTAGC 431292
Query 218878 GTGTTCAATCAGGCCGATGA 218897
|| ||| ||| || |||||
Sbjct 431293 GTCTTCCATCCCGCTGATGA 431312
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 547652 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 547593
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 547592 CCCGCATTGGGC 547581
>seq101
Length=1000389
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 14781 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 14840
Query 142564 CCCACATCGGGC 142575
||| ||| ||||
Sbjct 14841 CCCGCATTGGGC 14852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834613919606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |