Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq114 143 6e-29 seq70 140 8e-28 seq67 114 3e-20 >seq114 Length=793728 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||||||||||||| || || || | || || || || ||| Sbjct 567917 TCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 567858 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 567857 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 567801 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 567800 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 567741 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 567740 ACGAAGATCTGCAT 567727 Score = 138 bits (152), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | || | ||| || || |||||||| || ||| Sbjct 568184 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCG 568125 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || |||||||| ||||| ||||| ||| Sbjct 568124 GCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGG---TCT 568068 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || ||||| || || || || ||||| || || | || || Sbjct 568067 GGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGAC 568008 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 568007 TCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567955 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 567725 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 567666 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||| ||||| || |||||| Sbjct 567665 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGG---TCTGGG 567609 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || || || ||||| || || | || || || Sbjct 567608 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 567549 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 567548 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567499 >seq70 Length=566626 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||||||||||||| || || || | || || || || ||| Sbjct 51638 TCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 51579 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 51578 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 51522 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 51521 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 51462 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 51461 ACGAAGATTTGCAT 51448 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || |||||| Sbjct 51410 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAG 51351 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 51350 ATGAGACGTTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 51294 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 51293 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 51234 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 51233 ACGAAGATTTGCAT 51220 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||||||||||||| || || || | || || || || ||| Sbjct 52094 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 52035 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || || || || |||||||| || | ||| ||| Sbjct 52034 ATCAATCGCTGTTGG---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGTTTTGACG 51978 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 51977 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 51918 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 51917 ACGAAGATTTGCAT 51904 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || || ||| Sbjct 51866 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAG 51807 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| |||||| || || || || || ||||| || || || ||| Sbjct 51806 ATGAGACGTTGTTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACG 51750 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||||||||||||||| |||||||| |||||| Sbjct 51749 TTGTCAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTG 51690 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 51689 ACGAAGATTTGCAT 51676 >seq67 Length=473732 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || || |||||||| || |||||||| Sbjct 308838 CCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 308897 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 | ||||| || || || | || || || |||||||| ||||| || || ||||| Sbjct 308898 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGG---TCTGGC 308954 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || | || ||||| || || | ||| ||| || Sbjct 308955 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 309014 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || ||||| ||||||||||| || || ||||||||||| || || ||| Sbjct 309015 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 309062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651891022548