Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq67 114 1e-20 seq79 104 2e-17 seq101 100 3e-16 seq114 96.9 3e-15 seq70 96.9 3e-15 seq68 91.5 1e-13 >seq67 Length=473732 Score = 114 bits (126), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | || ||||| | | | ||||||||||| |||||||||||| Sbjct 308837 GCCACCTCGGAGGCGGAGGACCAAATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 308896 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || |||| |||| ||||| || ||||| || || Sbjct 308897 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 308956 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| Sbjct 308957 GATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCG 309014 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | ||| || || || ||||| || ||||| || ||| || Sbjct 309015 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 309065 >seq79 Length=767515 Score = 104 bits (114), Expect = 2e-17 Identities = 289/440 (66%), Gaps = 5/440 (1%) Strand=Plus/Minus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077 ||| ||| |||||||| || || | ||||| || | ||| || |||||| || | Sbjct 3842 AGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCAC 3783 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 | || ||||||| |||| | | || ||| |||| || | |||||| | | |||| | | Sbjct 3782 CTTGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCG 3723 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 | |||||| || || | | |||| ||||| | | || | | | | | Sbjct 3722 AGTAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAAC 3663 Query 154198 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCG 154256 | || || ||| || ||| || ||| |||||| ||| ||||| ||||||||| Sbjct 3662 CGATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTG-AGCGTGTCGTAGATGCCT 3604 Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316 ||||| ||| || | || |||||||||||| | | ||||| ||||| Sbjct 3603 TCGATCGAATCATCCTTCATCGTGACCAAGAAACACGACGAAAGCTGCGGGTGAGGCGTT 3544 Query 154317 CCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTAC 154376 || || ||||| || || ||||| ||||| | | ||| | | |||| Sbjct 3543 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGTTGTAC 3484 Query 154377 GTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATG 154436 | | | | || ||||| || | ||||||||||||| ||||| |||||||||||| Sbjct 3483 GACTGCAAGACGCGCTCGATGTCGTGCCCGTGAATGCCGACGGCGACACGCATGAGCATG 3424 Query 154437 TGCTGCGGACGTTCGGCGAC 154456 |||||||| ||||||||||| Sbjct 3423 TGCTGCGGGCGTTCGGCGAC 3404 >seq101 Length=1000389 Score = 100 bits (110), Expect = 3e-16 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | || || || | | | |||||||||||||||||||| ||| Sbjct 688355 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAATCGGCG 688414 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| |||| ||||| || ||||| || || Sbjct 688415 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGG 688474 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| | Sbjct 688475 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 688532 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||||| || | || || || || || || || ||||| || |||| Sbjct 688533 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 688580 >seq114 Length=793728 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || || || | | |||||||| || || ||||||||| Sbjct 567953 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 567894 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 567893 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 567834 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || ||||| | ||| || | ||||| | ||||| | Sbjct 567833 ATACCCTCCTTGTC-CTGGATCTTGGTTTTGACGTTG-TCAATCGTGTCCGAGGACTCGA 567776 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || ||||| || || || || |||||||| Sbjct 567775 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567727 >seq70 Length=566626 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||| || |||||||||||| Sbjct 52130 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 52071 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 52070 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 52011 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || ||||| | ||| || | ||||| | ||||| | Sbjct 52010 ATACCCTCCTTGTC-CTGGATCTTGGTTTTGACGTTG-TCAATCGTGTCCGAGGACTCGA 51953 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || ||||| || || || || || ||||| Sbjct 51952 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || || || | | |||||||| || || ||||||||| Sbjct 51674 CCTCCTCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 51615 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 51614 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 51555 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || ||||| | ||| || | ||||| | ||||| | Sbjct 51554 ATACCCTCCTTGTC-CTGGATCTTGGTTTTGACGTTG-TCAATCGTGTCCGAGGACTCGA 51497 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || ||||| || || || || || ||||| Sbjct 51496 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51448 >seq68 Length=952209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC-AGCCAAAGTACTTCAA 52756 ||||||||||| || || || || ||||||| | || |||| | || ||| || || Sbjct 97190 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 97248 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 ||| || || ||||| |||||||||| || ||||| ||||||||||| ||||| || Sbjct 97249 CGCCGAGAACCCCTTTGACTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 97308 Query 52817 CGAGAAGCGAGT 52828 ||||||||| || Sbjct 97309 CGAGAAGCGTGT 97320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261370255520