Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq114 147 2e-30 seq70 131 2e-25 seq68 91.5 1e-13 >seq114 Length=793728 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 567725 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 567666 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 567665 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 567606 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| ||||| ||| ||||||| |||||| Sbjct 567605 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGGACTCGAC 567547 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 567546 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567499 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || |||||||| ||| | | |||||| ||| || Sbjct 567936 CACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTC 567877 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| ||||||||||||| || || || || || |||||||||||| Sbjct 567876 GAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTG 567817 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || |||| ||||| | | ||||||| |||||| |||| || | ||| | Sbjct 567816 GATCTTGGTTTTGACGTTGT-CAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 567758 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || || |||||||| Sbjct 567757 TGCCGGTCAGGGTCTTGACGAAGATCTGCAT 567727 Score = 129 bits (142), Expect = 6e-25 Identities = 172/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||| ||||| || || |||||||| Sbjct 568187 TACTG-TCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTA 568129 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| | | |||||| ||| || ||||| || |||||| |||| | || || || || Sbjct 568128 ATCGGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTC 568069 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || ||||||||||||||| || || ||||| ||||| | | ||||||| Sbjct 568068 TGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGT-CAATCGTGTCCGAGG 568010 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 568009 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 567955 >seq70 Length=566626 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || |||||||| ||| | | |||||| ||| || Sbjct 51657 CACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCATCCTC 51598 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| ||||||||||||| || || || || || |||||||||||| Sbjct 51597 GAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTGTCCTG 51538 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || |||| ||||| | | ||||||| |||||| |||| || | ||| | Sbjct 51537 GATCTTGGTTTTGACGTTGT-CAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 51479 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || || || ||||| Sbjct 51478 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51448 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||| ||||| || || || ||||| ||| | | |||||| | Sbjct 52118 CGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCA 52059 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||||||| || || || || || ||||||||| Sbjct 52058 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATACCCTCCTTG 51999 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || |||| ||||| | | ||||||| |||||| |||| || | Sbjct 51998 TCCTGGATCTTGGTTTTGACGTTGT-CAATCGTGTCCGAGGACTCGACCTCGAGCGTGAT 51940 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||||||||| || || || || || ||||| Sbjct 51939 CGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51904 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || || ||||||||| | | ||||||| ||| || Sbjct 51429 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGACCATCCTC 51370 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||| | || || || || || || || |||||||||||| Sbjct 51369 GAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTTGTCCTG 51310 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || |||| ||||| | | ||||||| |||||| |||| || | ||| | Sbjct 51309 GATCTTGGTTTTGACGTTGT-CAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 51251 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || || || ||||| Sbjct 51250 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51220 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || || ||||||||| | | |||||| ||| || Sbjct 51885 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 51826 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || |||| | || || || || || || |||||||||||||| Sbjct 51825 GAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTG 51766 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| ||||| | | ||||||| |||||| |||| || | ||| | Sbjct 51765 GATCTTGGCCTTGACGTTGT-CAATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 51707 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || || || ||||| Sbjct 51706 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 51676 >seq68 Length=952209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| || ||||||||||| || | || | || | | ||| ||| | | | Sbjct 97190 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 97248 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 | ||||||| || || || |||||||||| || ||||||||||||||||| ||||| || Sbjct 97249 CGCCGAGAACCCCTTTGACTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 97308 Query 47558 CGAGAAGCGCGT 47569 ||||||||| || Sbjct 97309 CGAGAAGCGTGT 97320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499813335840