Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq53 334 2e-87 seq75 93.3 1e-14 >seq53 Length=16508 Score = 334 bits (370), Expect = 2e-87 Identities = 548/787 (70%), Gaps = 2/787 (0%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 |||||| |||| | || || |||||||| || | || | || ||||| |||| || Sbjct 10951 ATGAAAGCATATTTGGATTTACTGCAAGATATTCTCGATCATGGTGTGGAAAAAGGGGAC 11010 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 ||||| || |||||||| ||||| || || ||||| ||||| |||||| | | ||| Sbjct 11011 CGGACAGGTACAGGCACCTTGTCCGTATTTGGCCGCCAGCTTCGCTTTGATCTATCGGAA 11070 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || || ||||| || || || ||| | ||| | || | || ||||||| ||| Sbjct 11071 GGTTTTCCGCTGGTAACAACAAAACGAGTACATCTGAAATCCGTTGTTCATGAACTTCTC 11130 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGG 45676 ||||| | || || ||||| || | |||| |||| |||||||| || | |||||| Sbjct 11131 TGGTTCCTTAAGGGAGATACCAACATATCCTATCTGCATGAGAATGGAGTTTCCATTTGG 11190 Query 45677 GACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCG 45736 || || ||||| ||||| ||||| || || || || | |||||| | || ||||| || Sbjct 11191 GATGAATGGGCGGATGAGAACGGTGAGCTTGGACCGGTTTACGGCTCCCAGTGGCGCTCC 11250 Query 45737 TGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAG 45796 ||| ||| | | ||||| | | | ||||| ||||| || | | | | || ||| Sbjct 11251 TGGGAAGCGCCGGACGGCCGGAAGATTGACCAGATTGCTGCTTTGGTAGACGGCATTAAG 11310 Query 45797 CGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAA 45856 ||| ||||| || || || || || ||||| ||||| || || || | | | Sbjct 11311 AACAATCCGAATTCCCGCCGTCACCTGGTCAGCGCATGGAATGTAGCGGAGATCGATAAT 11370 Query 45857 ATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCA 45916 |||||| | || ||||| |||| | ||||| || || || || | || ||||| Sbjct 11371 ATGAAGCTCCCGCCATGCCATTTTGTGTTTCAATTCTATGTGGCTGACGGTAAATTGTCC 11430 Query 45917 TGCATG-TGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGCTAG 45975 |||||| || | | ||||||||| ||||| || || ||| ||||||||||||| || || Sbjct 11431 TGCATGCTGACGAT-GCGTTCTGTGGATACCTTCCTTGGACTGCCGTTTAACATTGCAAG 11489 Query 45976 CTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAACTCAT 46035 |||||||| ||||| |||||| ||||||| || ||||| || || ||||| || |||| Sbjct 11490 TTATGCGCTTTTGACCCATATGATTGCCCAGCAGTGCGATCTGGAAGTCGGGGAGTTCAT 11549 Query 46036 TTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCT 46095 | |||| || ||||| ||| | || || |||||||| || | || ||| | Sbjct 11550 CTGGTCCGGAGGAGACGTGCATATCTATTCCAACCATCTGGAGCAGGTTAAGACCCAGTT 11609 Query 46096 GACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTT 46155 | | | || || ||||||||| |||| || || |||||||||||| || || || Sbjct 11610 GGCCAGAGAACCTTATCCGCTGCCGCAGCTTGTTATTAAACGGAAGCCGGATTCCATTTT 11669 Query 46156 TGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGC 46215 ||| || ||| |||||||| || ||||| |||| | | || |||| ||||| || Sbjct 11670 TGATTACAAATTTGAGGATTTCGAGTTTGTGAACTATCAGCATCATCCGGGAATTAAAGC 11729 Query 46216 TCCTGTA 46222 || ||| Sbjct 11730 GCCGGTA 11736 >seq75 Length=349689 Score = 93.3 bits (102), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35764 TGAAGCAGACGGCGAAAGATTTAAACGTCCCGATCATTGTCCTGGCACAACTGAACCGGG 35823 ||||||||| ||| || | | || ||| |||| | | || | || || ||||| Sbjct 64296 TGAAGCAGATCGCGCGTGAGCTGGAAGTGCCGGTCATCGCCTTGTCCCAGCTCTCCCGGG 64237 Query 35824 CAGTGGAGCAAAGGGCGGACAAACGCCCGACGATGGCAGACCTTCGAGAGTCGGGAAGCA 35883 |||||||| || ||||||||| |||| |||| | |||||||| ||||| || | Sbjct 64236 GTGTGGAGCAGCGGCAGGACAAACGTCCGATGATGTCCGACCTTCGGGAGTCCGGTTCGA 64177 Query 35884 TCGAGCAAATTGCTGATTTGATTGCCTTCCTGTACCGCGAGGACTATTACAATCGGGACG 35943 ||||||| ||| ||| | | || ||||||||||| || || || ||||| | ||| Sbjct 64176 TCGAGCAGGATGCCGATATCGTAGCGTTCCTGTACCGGGACGATTACTACAACCAGGAAA 64117 Query 35944 CTGAACAAACAGGA-ATCACAGAAATTATTGTTGCCAAAAACCGTAACGG 35992 | | | || || | |||| || ||||| | ||||| | |||||||| Sbjct 64116 CCG-AGAAGAAGAACATCATCGAGATTATCATCGCCAAGCAGCGTAACGG 64068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157750089034524