Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq114 89.7 3e-12 seq123 87.8 1e-11 >seq114 Length=793728 Score = 89.7 bits (98), Expect = 3e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||| || || || | | ||| ||||| ||||| ||||| || || |||||||| Sbjct 568134 ATTGTAATCGGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTG 568075 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || || ||||| || |||||||| |||||||| ||||| ||||| || || Sbjct 568074 TTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATCGTGTC 568015 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || || || || || || ||||| || ||||| ||||| ||||| Sbjct 568014 CGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTG 567958 >seq123 Length=42994 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| | || || ||||| ||||| || || || || || || || ||||||||| Sbjct 24598 GTAACCCAAGCGGTTATTACCGTTCCGGCTTACTTCAACGACAGCCAGCGCCAAGCAACT 24539 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| ||||| | ||| || ||||| | || | ||||| | || |||||||| || Sbjct 24538 AAAGACGCGGGTAAAATCGCGGGTCTCGAAGTGCTGCGTATCGTCAACGAACCAACGGCG 24479 Query 474848 GCCGCACTTGCTTATGGTCTTGATAA 474873 || || |||||||| ||||| || || Sbjct 24478 GCGGCTCTTGCTTACGGTCTGGAAAA 24453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172079454568