Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq79 226 3e-53 seq114 105 8e-17 seq68 102 1e-15 seq136 100 3e-15 seq100 93.3 5e-13 >seq79 Length=767515 Score = 226 bits (250), Expect = 3e-53 Identities = 335/471 (71%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| || |||| ||||||||||| |||| |||||| || Sbjct 3780 TGGTCGACGTAGCGCGCGGTGTTATTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 3721 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 3720 TAGCCGTTCGTGCCGGCAATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 3661 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | |||||||||||| |||||| |||||||||||||||||||| ||| Sbjct 3660 ATACCACCGGCGGTCTTGGAGATGAGAGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 3601 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||| || ||||||| || | ||||| |||||||| |||||||| | ||| || Sbjct 3600 ATCGAATCATCCTTCATCGTGACCAAGAAA-CACGACGAAAGCTGCGGGTGAGGCGTTCC 3542 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GG 1630363 ||||||||||||||| |||| || ||| || || || |||||| || ||| | Sbjct 3541 GGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTACCGCTCGGACATGAGGTTGTACGA 3482 Query 1630364 TGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGA 1630423 || || |||||| || | |||| ||| | ||||| ||||| Sbjct 3481 CTGCAAG-ACGCGC------------TCGATGTCG---TGCCCGTGAATGCCGACGGCGA 3438 Query 1630424 CGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGG 1630483 | ||||||||||||| ||| || || ||| |||| |||| | || ||||| Sbjct 3437 CACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCAATGCGAAGCAAGTAGG 3378 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| |||||||||| || | ||||||||||||| Sbjct 3377 AGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 3327 Score = 143 bits (158), Expect = 3e-28 Identities = 298/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||| || | |||| | |||| || |||||| Sbjct 4230 GGCGCCGAGTACTCGATGATCTCGGTGCACAAATTCGACGACTTGATCGTGCCAAGGTTC 4171 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | || ||| |||||||||||| ||||||| |||| ||| || ||| Sbjct 4170 TTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 4111 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| ||| ||| || || |||| | || ||||||| | || | || ||||| Sbjct 4110 ACCTGGGCCTCGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 4052 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 |||| | || | |||| ||| ||||| || Sbjct 4051 ACCCTCCTTTTCGTATTTCTCGAACAAGGCCTTGAACTCTTCGCCATAGACTTCGTGGAG 3992 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 ||||| || |||| || || ||||| | ||||||||| ||| | | | || ||| Sbjct 3991 ACCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCAT 3932 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||||| || |||| || || ||||||| || || || ||| ||||||||||| Sbjct 3931 GAAGAGATCGGGAATCCAGAGCGCCAAAAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 3872 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 ||||||||| ||||| || | |||| | ||| |||||||||||||| |||||| Sbjct 3871 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGCTCGAGGTAGAT 3812 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 3811 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 3782 Score = 116 bits (128), Expect = 5e-20 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| | ||||||| |||||||| || Sbjct 5380 TGGTCGACGGTGAACTTGATTGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 5321 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 5320 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTCGGG 5261 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||| | ||| | |||||||||| Sbjct 5260 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCAATGAAGGCACCTCGATCGGCCGA 5202 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 5201 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 5143 Query 1627220 CG 1627221 || Sbjct 5142 CG 5141 >seq114 Length=793728 Score = 105 bits (116), Expect = 8e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| |||||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 310904 ATCGGTGGCACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 310845 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 310844 -TTCGACAAGCTGGAAGCCCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 310786 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 310785 CTTTGAGATTGG 310774 Score = 96.9 bits (106), Expect = 4e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| |||| | || || || || | Sbjct 404745 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAGAAGGTCACACTCCCACCGG 404804 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||||| | || ||| |||||||| | Sbjct 404805 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAGCAAG 404864 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 404865 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 404924 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||| ||| | | || ||||| |||||||| Sbjct 404925 AGAGCAACAAGATCATTGAGCCGATTCAGAGTCGATGCGCCAT 404967 >seq68 Length=952209 Score = 102 bits (112), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 869704 GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGAC 869763 ||| || || ||| ||||||| |||||||||||| |||||||||||| || ||||| Sbjct 96310 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 96251 Query 869764 GTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGC 869820 |||| ||| |||| |||||||||| ||||| |||||| | |||| Sbjct 96250 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 96191 Query 869821 GCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | | ||||| ||| ||||||||||| | || ||||||||||| |||||| Sbjct 96190 GGACAAGTCCATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 96139 >seq136 Length=578008 Score = 100 bits (110), Expect = 3e-15 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 36894 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 36835 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | || ||| | | ||| || | || ||| | ||||||| |||| | Sbjct 36834 TGGTCAATCTCTGGTTGTATTTCGCGAGTTTGGACGCTTCGAGGGCGATGCGCTCGAAGA 36775 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| |||||||| | || | ||||| |||||| || || || |||||||| Sbjct 36774 TGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAAATACCGGTGTCGGGGT 36715 Query 1254523 GCACCTGCTTGAGCACCTTG 1254542 | || ||||| | ||||||| Sbjct 36714 GGACTTGCTTCAACACCTTG 36695 >seq100 Length=1345518 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 305470 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 305411 Query 1254403 TCGTGTTGCGCTTGTTCGAGT---GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| || |||||| || |||| || | |||||| || |||||| || | Sbjct 305410 TCGTC--GC-CTTGTTATTGTATAGCGCGAGCTTGGACGCCTCGATGGAGATGCGCTCAA 305354 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 305353 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 305294 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||| | | ||| ||| Sbjct 305293 GGTGAACTTGCCTCAACACTTTG 305271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125577262622