Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12-
23] 166 sequences; 31,780,530 total letters
Query= NC_022980.1
Length=45798
Score E
Sequences producing significant alignments: (Bits) Value
seq63 127 6e-25
>seq63
Length=35995
Score = 127 bits (140), Expect = 6e-25
Identities = 206/294 (70%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 4478 GATTTAAAAAAGAGTGTTGGTGACAACGAGGACTTGAAAAAGCAAATCGAGATACTACAA 4537
||||| |||||| || || || || || | | |||||||||||||| | || ||
Sbjct 20983 GATTTGAAAAAGTCTGCAGGCGATAATGAAGCTCTTAAAAAGCAAATCGAAACGCTTCAG 21042
Query 4538 AGTGATAACAAAGCTAAGGATGAACAGTATCAAACCAAGATTAAGGATATGCAGGTGTCT 4597
| || ||||| | | | || || || | | || | |||||| ||||| | ||
Sbjct 21043 GGCGAGAACAAGACAACTAAAGAGCAATACGAGGCAAAAGTGAAGGATCTGCAGCTCACT 21102
Query 4598 ACAGCTATCAAGCTTGCTTTAGCAGGTGAAGCTCATGATCCTGATCTTATTGCTGGTCTC 4657
||||| | || || ||| | || || ||| |||||||| ||| | | || || ||
Sbjct 21103 ACAGCCGTTAAACTGGCTCTGGCCGGGCAAGTGCATGATCCGGATATCGTGGCGGGGCTT 21162
Query 4658 CTAGACAAATCAAAAATCGAGATCAATGAAGACGGCACATTAAAAGGCGGTCTTGATGAT 4717
|| |||||| | |||||||||||| || |||||| | |||| ||||||||| |||
Sbjct 21163 CTGGACAAAACCAAAATCGAGATCGGAGAGGACGGCGGCGTTAAAGCCGGTCTTGAAGAT 21222
Query 4718 CAAGTT-AAGGCGTTGCGTGAGAGCAAGGCTTTTTTATTTGTCGAAAAACAGGA 4770
||| || ||||| || || || ||||||| ||||| ||| |||||||||||
Sbjct 21223 CAAATTAAAGGCCTT-CGCGAAAGCAAGGGCTTTTTGTTTACGGAAAAACAGGA 21275
Score = 123 bits (136), Expect = 7e-24
Identities = 286/427 (67%), Gaps = 8/427 (2%)
Strand=Plus/Plus
Query 9655 AATGTTTTTACGG--GCTGGAGATACCATTTCTGGACAAGAAGCAAGGGCTTACGCAACG 9712
||||| |||| | || || ||| | ||||| || || ||||| | | || |||||
Sbjct 26232 AATGTGTTTATGAAAGCGGGGGATGCAATTTCCGGGCAGGAAGCCCGCGGCTATACAACG 26291
Query 9713 ATCAATGGTCGTGTAGAAGAAATGTTTTATGCaaaaaaattagaagctaaggtaaaaaag 9772
|| || || | || | |||||||||||||| |||| | || || | || | |
Sbjct 26292 ATTAACGGCCAAGTGCAGGAAATGTTTTATGCCAAAACCCTTGAGGCGACGGCCGA---G 26348
Query 9773 aaaaagaaagCC-ATT--AATACACTTGGTGCGCGAGGTTCTCAAAGTAAAGCGACAGGC 9829
||||| ||||| ||| || | || || ||| ||| | || || || || || |||
Sbjct 26349 AAAAACAAAGCGGATTTCAAAGCGCTCGGAAAGCGCGGTACGCAGAGCAAGGCTACCGGC 26408
Query 9830 TGGGAAGGCTCAGGGAGTATGCAAATTTACTATACTACCACCTTGTTCCGTCAAATGATG 9889
||| | || | || |||||| ||||| ||| | || | | || || |||||||||
Sbjct 26409 TGGAAGGGTACGGGCAGTATGACTATTTATTATGCAACGCCGATTTTTCGCCAAATGATG 26468
Query 9890 TTGGAATACATGAAAACAGGGAAAGATACTTACTTTGATATCCAAGTAGTCAATGAAGAT 9949
| || || || || || || || ||||| || |||||| | || || |||| || |||
Sbjct 26469 CTTGATTATATTAAGACCGGCAAGGATACCTATTTTGATGTTCAGGTGATCAACGAGGAT 26528
Query 9950 GAGAACTCAACCATAGGCAAACAAACAGTTGTAATAAAAGGGATCAACTTGGATGAAGTA 10009
|| | || || ||||| ||||| || || | ||| | ||| |||| |||
Sbjct 26529 CCGAGCAGTACGATTGGCAAGCAAACGGTGGTGTTGAAAAACGTAAACCTGGACAGCGTA 26588
Query 10010 ACTTTAGCTTTATTTGATGTTGATGCTGAGGTACTAGAAGAAGATATGGCTTTCACTTTC 10069
| | ||| |||||||||||| || || | || || || ||||| | ||| || |||
Sbjct 26589 GTTATGGCTAAATTTGATGTTGAAGCCGATTTCCTGGACGAGGATATTGATTTTACATTC 26648
Query 10070 CATGACG 10076
||||||
Sbjct 26649 GATGACG 26655
Score = 84.2 bits (92), Expect = 6e-12
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 15675 CGTACAATAGAGTAAAGATTGTACAAGACAATAAGAAAACAAAGAAACGAGATGTTTACA 15734
|||| || | || ||| | || || ||||| ||||| || ||||| || || || ||||
Sbjct 31689 CGTATAACCGCGTCAAGCTGGTCCAGGACAACAAGAAGACCAAGAAGCGGGACGTGTACA 31748
Query 15735 TTGCCCAAGACTCAGCGAATATCGCCAAATGGGGGCGTTTGCAGTTGTTTGAAAAAGTGG 15794
||| || ||| |||||||||||||||||||| ||||||| || | ||| || |
Sbjct 31749 TTGAACAGGACAGCGCGAATATCGCCAAATGGGGCAAGTTGCAGTATTTCGTAAAGGTTG 31808
Query 15795 ACGAGGGCATGACGAAAGCACAAATTAAACAACT 15828
| || | || | |||| |||||||| || ||
Sbjct 31809 AGGACGACAAAAACGAAGCCCAAATTAAGCAGCT 31842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146431711345920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |