Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_022980.1 Length=45798 Score E Sequences producing significant alignments: (Bits) Value seq63 127 6e-25 >seq63 Length=35995 Score = 127 bits (140), Expect = 6e-25 Identities = 206/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 4478 GATTTAAAAAAGAGTGTTGGTGACAACGAGGACTTGAAAAAGCAAATCGAGATACTACAA 4537 ||||| |||||| || || || || || | | |||||||||||||| | || || Sbjct 20983 GATTTGAAAAAGTCTGCAGGCGATAATGAAGCTCTTAAAAAGCAAATCGAAACGCTTCAG 21042 Query 4538 AGTGATAACAAAGCTAAGGATGAACAGTATCAAACCAAGATTAAGGATATGCAGGTGTCT 4597 | || ||||| | | | || || || | | || | |||||| ||||| | || Sbjct 21043 GGCGAGAACAAGACAACTAAAGAGCAATACGAGGCAAAAGTGAAGGATCTGCAGCTCACT 21102 Query 4598 ACAGCTATCAAGCTTGCTTTAGCAGGTGAAGCTCATGATCCTGATCTTATTGCTGGTCTC 4657 ||||| | || || ||| | || || ||| |||||||| ||| | | || || || Sbjct 21103 ACAGCCGTTAAACTGGCTCTGGCCGGGCAAGTGCATGATCCGGATATCGTGGCGGGGCTT 21162 Query 4658 CTAGACAAATCAAAAATCGAGATCAATGAAGACGGCACATTAAAAGGCGGTCTTGATGAT 4717 || |||||| | |||||||||||| || |||||| | |||| ||||||||| ||| Sbjct 21163 CTGGACAAAACCAAAATCGAGATCGGAGAGGACGGCGGCGTTAAAGCCGGTCTTGAAGAT 21222 Query 4718 CAAGTT-AAGGCGTTGCGTGAGAGCAAGGCTTTTTTATTTGTCGAAAAACAGGA 4770 ||| || ||||| || || || ||||||| ||||| ||| ||||||||||| Sbjct 21223 CAAATTAAAGGCCTT-CGCGAAAGCAAGGGCTTTTTGTTTACGGAAAAACAGGA 21275 Score = 123 bits (136), Expect = 7e-24 Identities = 286/427 (67%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 9655 AATGTTTTTACGG--GCTGGAGATACCATTTCTGGACAAGAAGCAAGGGCTTACGCAACG 9712 ||||| |||| | || || ||| | ||||| || || ||||| | | || ||||| Sbjct 26232 AATGTGTTTATGAAAGCGGGGGATGCAATTTCCGGGCAGGAAGCCCGCGGCTATACAACG 26291 Query 9713 ATCAATGGTCGTGTAGAAGAAATGTTTTATGCaaaaaaattagaagctaaggtaaaaaag 9772 || || || | || | |||||||||||||| |||| | || || | || | | Sbjct 26292 ATTAACGGCCAAGTGCAGGAAATGTTTTATGCCAAAACCCTTGAGGCGACGGCCGA---G 26348 Query 9773 aaaaagaaagCC-ATT--AATACACTTGGTGCGCGAGGTTCTCAAAGTAAAGCGACAGGC 9829 ||||| ||||| ||| || | || || ||| ||| | || || || || || ||| Sbjct 26349 AAAAACAAAGCGGATTTCAAAGCGCTCGGAAAGCGCGGTACGCAGAGCAAGGCTACCGGC 26408 Query 9830 TGGGAAGGCTCAGGGAGTATGCAAATTTACTATACTACCACCTTGTTCCGTCAAATGATG 9889 ||| | || | || |||||| ||||| ||| | || | | || || ||||||||| Sbjct 26409 TGGAAGGGTACGGGCAGTATGACTATTTATTATGCAACGCCGATTTTTCGCCAAATGATG 26468 Query 9890 TTGGAATACATGAAAACAGGGAAAGATACTTACTTTGATATCCAAGTAGTCAATGAAGAT 9949 | || || || || || || || ||||| || |||||| | || || |||| || ||| Sbjct 26469 CTTGATTATATTAAGACCGGCAAGGATACCTATTTTGATGTTCAGGTGATCAACGAGGAT 26528 Query 9950 GAGAACTCAACCATAGGCAAACAAACAGTTGTAATAAAAGGGATCAACTTGGATGAAGTA 10009 || | || || ||||| ||||| || || | ||| | ||| |||| ||| Sbjct 26529 CCGAGCAGTACGATTGGCAAGCAAACGGTGGTGTTGAAAAACGTAAACCTGGACAGCGTA 26588 Query 10010 ACTTTAGCTTTATTTGATGTTGATGCTGAGGTACTAGAAGAAGATATGGCTTTCACTTTC 10069 | | ||| |||||||||||| || || | || || || ||||| | ||| || ||| Sbjct 26589 GTTATGGCTAAATTTGATGTTGAAGCCGATTTCCTGGACGAGGATATTGATTTTACATTC 26648 Query 10070 CATGACG 10076 |||||| Sbjct 26649 GATGACG 26655 Score = 84.2 bits (92), Expect = 6e-12 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 15675 CGTACAATAGAGTAAAGATTGTACAAGACAATAAGAAAACAAAGAAACGAGATGTTTACA 15734 |||| || | || ||| | || || ||||| ||||| || ||||| || || || |||| Sbjct 31689 CGTATAACCGCGTCAAGCTGGTCCAGGACAACAAGAAGACCAAGAAGCGGGACGTGTACA 31748 Query 15735 TTGCCCAAGACTCAGCGAATATCGCCAAATGGGGGCGTTTGCAGTTGTTTGAAAAAGTGG 15794 ||| || ||| |||||||||||||||||||| ||||||| || | ||| || | Sbjct 31749 TTGAACAGGACAGCGCGAATATCGCCAAATGGGGCAAGTTGCAGTATTTCGTAAAGGTTG 31808 Query 15795 ACGAGGGCATGACGAAAGCACAAATTAAACAACT 15828 | || | || | |||| |||||||| || || Sbjct 31809 AGGACGACAAAAACGAAGCCCAAATTAAGCAGCT 31842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146431711345920