Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015425.1_202016-12- 23] 166 sequences; 31,780,530 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq79 212 9e-49 seq68 111 2e-18 seq136 98.7 1e-14 seq100 91.5 2e-12 >seq79 Length=767515 Score = 212 bits (234), Expect = 9e-49 Identities = 287/396 (72%), Gaps = 23/396 (6%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| ||| || || ||| | |||||||||||||||||| | ||| | | ||| Sbjct 3404 GTCGCCGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATTCACGGGCA---- 3459 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACC-TACGAGGCCATGTCGCAGCAGTT 259908 ||||| | |||| ||| || || | ||| | |||||| ||| || Sbjct 3460 -----CGACA------TCGAGCGCGT-CTTGCAGTCGTACAACCTCATGTCCGAGCGGTA 3507 Query 259909 GTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968 || ||| || |||| |||||||| || ||||| ||||| | ||||||| |||||| Sbjct 3508 CTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTC 3567 Query 259969 GTGCTTTCTGTTGGACA---TGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAA 260025 ||| ||||| ||| || |||||| ||||||||||| |||||||| ||||||||||| Sbjct 3568 GTG-TTTCT--TGGTCACGATGAAGGATGATTCGATCGAAGGCATCTACGACACGCTCAA 3624 Query 260026 GCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCG 260085 | |||||| |||||||||||| | ||||| || |||||||| | ||||| | || Sbjct 3625 GACGTGCGCTCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCG 3684 Query 260086 CGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCT 260145 ||| | ||| ||||| | || ||||| |||||| | || |||||| | || |||||||| Sbjct 3685 CGCGACCGGCTCCTACATTGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCT 3744 Query 260146 TCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || | || |||| ||||||||||||||||| Sbjct 3745 CCGTGTCTACAATAACACCGCGCGCTACGTCGACCA 3780 Score = 123 bits (136), Expect = 4e-22 Identities = 299/456 (66%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||| ||| || Sbjct 3782 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTC 3841 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 3842 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 3895 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||||| | || |||| ||| || || ||| || | | | ||| | || Sbjct 3896 GATCTCTTTTTGGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 3955 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | ||||| ||||| |||| || ||||| || |||||| |||||||| | Sbjct 3956 GACTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGTCTCCACGAAGTCTATGGCGAAGAG 4015 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || | ||| | | ||| | || | || | ||||| Sbjct 4016 TTCAAGGCCTTGTTCGAGAAATACGAAAAGGAGGGTCGCGCCAAGA-AGACGATCCCCGC 4074 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| ||| |||||| |||| || |||| |||| |||| | Sbjct 4075 GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCT 4134 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206 |||||||||||||| ||| || ||||| ||||||| ||||| | | | | Sbjct 4135 CTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTC 4194 Query 262207 CAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCC 262242 || |||||||||||||| || ||| ||| |||| Sbjct 4195 GAATTTGTGCACCGAGATCATCGAGTACTCGGCGCC 4230 Score = 93.3 bits (102), Expect = 6e-13 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 5141 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 5199 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| | |||||| || ||||||||| | || | | || Sbjct 5200 TGTCGGCCGATCGAGGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 5258 Query 263291 A-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 5259 AGCCCGACGATGGCGCAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 5317 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| || |||||||| ||||||| || |||| | | || || | ||||||||||| Sbjct 5318 GACGGGTATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCAATCAAGTTCACCGTCGA 5377 Query 263409 TCA 263411 || Sbjct 5378 CCA 5380 >seq68 Length=952209 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 96127 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 96185 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 96186 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 96245 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 96246 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 96304 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 96305 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 96361 >seq136 Length=578008 Score = 98.7 bits (108), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | || || |||||| | ||| Sbjct 36695 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATT-TCGAACAAGGCGATGCT 36748 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC-- 725033 |||| | |||||||| ||||||||||| |||| ||||||| | ||| || ||| Sbjct 36749 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCCTCGAAGC--GTCCAAA 36806 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || ||| | |||| || | || ||| ||||||||||||||||| | || || Sbjct 36807 CTCGCGAAATACAACCAGAGATTGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCGA 36866 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 36867 TTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 36913 >seq100 Length=1345518 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 305307 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCTC 305366 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 || |||||| ||| | || ||| | | |||| ||| |||||| |||||| Sbjct 305367 CATCGAGGC--GTC--CAAGCTCGCGCTATACAATAACAAGGCGACGATCACGTCGCGCG 305422 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 305423 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 305482 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 305483 AAGGCACCA 305491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177795188994892